miRNA display CGI


Results 1 - 20 of 554 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31006 5' -61 NC_006560.1 + 122876 1.1 0.000868
Target:  5'- gGUACACCGCCGAGCUCGCGGCCACCCu -3'
miRNA:   3'- -CAUGUGGCGGCUCGAGCGCCGGUGGG- -5'
31006 5' -61 NC_006560.1 + 143086 0.87 0.039493
Target:  5'- -cGCGCCcCCGAGCcgCGCGGCCACCCc -3'
miRNA:   3'- caUGUGGcGGCUCGa-GCGCCGGUGGG- -5'
31006 5' -61 NC_006560.1 + 144035 0.84 0.05987
Target:  5'- -gACGcCCGCCGGGCUcgccuaagcggccCGCGGCCGCCCc -3'
miRNA:   3'- caUGU-GGCGGCUCGA-------------GCGCCGGUGGG- -5'
31006 5' -61 NC_006560.1 + 27637 0.83 0.071974
Target:  5'- -gGCGCgGCCGGGCgcggggCGCGGCCGCCg -3'
miRNA:   3'- caUGUGgCGGCUCGa-----GCGCCGGUGGg -5'
31006 5' -61 NC_006560.1 + 90343 0.82 0.079795
Target:  5'- -gACGCCGUCGcGCggGCGGCCGCCCa -3'
miRNA:   3'- caUGUGGCGGCuCGagCGCCGGUGGG- -5'
31006 5' -61 NC_006560.1 + 118072 0.82 0.079795
Target:  5'- -gGCGCCcccGCCGAGCUCGCGGCgggcgacgaCGCCCc -3'
miRNA:   3'- caUGUGG---CGGCUCGAGCGCCG---------GUGGG- -5'
31006 5' -61 NC_006560.1 + 57582 0.82 0.084005
Target:  5'- --cCACCGCgCGAGCggagagacgccCGCGGCCACCCa -3'
miRNA:   3'- cauGUGGCG-GCUCGa----------GCGCCGGUGGG- -5'
31006 5' -61 NC_006560.1 + 110751 0.81 0.090718
Target:  5'- -cGCACCGCCuacGGGCaCGCGGCCGCCa -3'
miRNA:   3'- caUGUGGCGG---CUCGaGCGCCGGUGGg -5'
31006 5' -61 NC_006560.1 + 128472 0.81 0.097939
Target:  5'- -gACGCCGCCGGGCgaCGUGGCCACg- -3'
miRNA:   3'- caUGUGGCGGCUCGa-GCGCCGGUGgg -5'
31006 5' -61 NC_006560.1 + 66917 0.81 0.100464
Target:  5'- -gGCGCCGCCGuccGC-CGCGGCC-CCCg -3'
miRNA:   3'- caUGUGGCGGCu--CGaGCGCCGGuGGG- -5'
31006 5' -61 NC_006560.1 + 75386 0.8 0.1057
Target:  5'- cGgcCGCCGCCGAccuggcggagaaGCUCGCGGCCcggcgcGCCCg -3'
miRNA:   3'- -CauGUGGCGGCU------------CGAGCGCCGG------UGGG- -5'
31006 5' -61 NC_006560.1 + 79297 0.8 0.111192
Target:  5'- gGU-CGCCGCCGGGC-C-CGGCCGCCCc -3'
miRNA:   3'- -CAuGUGGCGGCUCGaGcGCCGGUGGG- -5'
31006 5' -61 NC_006560.1 + 24643 0.8 0.111192
Target:  5'- -gGCGCCGUCGAGUUCcugggccugcugGCGGCCGCCg -3'
miRNA:   3'- caUGUGGCGGCUCGAG------------CGCCGGUGGg -5'
31006 5' -61 NC_006560.1 + 85488 0.8 0.11695
Target:  5'- cUGCGCCGCuUGGGCUCGgGGUCGCCg -3'
miRNA:   3'- cAUGUGGCG-GCUCGAGCgCCGGUGGg -5'
31006 5' -61 NC_006560.1 + 105677 0.8 0.11695
Target:  5'- cUACuCCGUCcggGAGCUCGCGGCgACCCa -3'
miRNA:   3'- cAUGuGGCGG---CUCGAGCGCCGgUGGG- -5'
31006 5' -61 NC_006560.1 + 112956 0.8 0.122984
Target:  5'- aUGCGCCGCgCgGAGCUCGaCGGUCACCg -3'
miRNA:   3'- cAUGUGGCG-G-CUCGAGC-GCCGGUGGg -5'
31006 5' -61 NC_006560.1 + 35252 0.79 0.139356
Target:  5'- -cGCACCuGCgGGGCcgCGCGGCCGCCg -3'
miRNA:   3'- caUGUGG-CGgCUCGa-GCGCCGGUGGg -5'
31006 5' -61 NC_006560.1 + 101845 0.79 0.142862
Target:  5'- -aGCGCC-CCGcGCUCguaGCGGCCGCCCg -3'
miRNA:   3'- caUGUGGcGGCuCGAG---CGCCGGUGGG- -5'
31006 5' -61 NC_006560.1 + 83025 0.79 0.142862
Target:  5'- aGUGCGCCGCCG-GCaucuUCGUGGCCGCg- -3'
miRNA:   3'- -CAUGUGGCGGCuCG----AGCGCCGGUGgg -5'
31006 5' -61 NC_006560.1 + 49997 0.79 0.142862
Target:  5'- -gACGCCGCCGgacguccacgGGCcCGCGGCC-CCCg -3'
miRNA:   3'- caUGUGGCGGC----------UCGaGCGCCGGuGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.