miRNA display CGI


Results 1 - 20 of 554 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31006 5' -61 NC_006560.1 + 211 0.72 0.34037
Target:  5'- -cGCGCCGCCGcgggagggcccGGCcCGCGGCUcggugcggGCCCc -3'
miRNA:   3'- caUGUGGCGGC-----------UCGaGCGCCGG--------UGGG- -5'
31006 5' -61 NC_006560.1 + 520 0.68 0.576287
Target:  5'- -gGCGCCGggGGGCg-GCGGCCGgCCg -3'
miRNA:   3'- caUGUGGCggCUCGagCGCCGGUgGG- -5'
31006 5' -61 NC_006560.1 + 648 0.67 0.655041
Target:  5'- -cGCACgGCCccaGGUUCGCaccccGGCgCGCCCg -3'
miRNA:   3'- caUGUGgCGGc--UCGAGCG-----CCG-GUGGG- -5'
31006 5' -61 NC_006560.1 + 892 0.67 0.615573
Target:  5'- -cGCcccCCGCCgGGGC-CGcCGGCCGCUCc -3'
miRNA:   3'- caUGu--GGCGG-CUCGaGC-GCCGGUGGG- -5'
31006 5' -61 NC_006560.1 + 1092 0.66 0.674702
Target:  5'- -cGC-CCGCCaGGCUCcccgGCGGCgcgaGCCCc -3'
miRNA:   3'- caUGuGGCGGcUCGAG----CGCCGg---UGGG- -5'
31006 5' -61 NC_006560.1 + 1162 0.68 0.605718
Target:  5'- ---gGCgGCCGGGUUCucuGCGGaCCGCUCg -3'
miRNA:   3'- caugUGgCGGCUCGAG---CGCC-GGUGGG- -5'
31006 5' -61 NC_006560.1 + 1283 0.7 0.490565
Target:  5'- -aGCccCCGCCGcGC-CG-GGCCGCCCg -3'
miRNA:   3'- caUGu-GGCGGCuCGaGCgCCGGUGGG- -5'
31006 5' -61 NC_006560.1 + 1471 0.68 0.595881
Target:  5'- cGUGCGCgCGCCccaucggaGGCgCGCGGcCCACgCCg -3'
miRNA:   3'- -CAUGUG-GCGGc-------UCGaGCGCC-GGUG-GG- -5'
31006 5' -61 NC_006560.1 + 1518 0.72 0.362983
Target:  5'- cGUGCAUCGggccCCGGGCgcgCGCccGGCCACgCCg -3'
miRNA:   3'- -CAUGUGGC----GGCUCGa--GCG--CCGGUG-GG- -5'
31006 5' -61 NC_006560.1 + 1899 0.68 0.566543
Target:  5'- -gGCGgCGCCG-GCUaccaguccucgGCGGCCGCCg -3'
miRNA:   3'- caUGUgGCGGCuCGAg----------CGCCGGUGGg -5'
31006 5' -61 NC_006560.1 + 1961 0.67 0.624453
Target:  5'- -cGCGCCccccagggcggggGCgGGGCUCGgGGCCggGCCa -3'
miRNA:   3'- caUGUGG-------------CGgCUCGAGCgCCGG--UGGg -5'
31006 5' -61 NC_006560.1 + 2023 0.66 0.674702
Target:  5'- -gGCGUCGgCGAGCagcgugucggCGCGGCCggcgGCCCa -3'
miRNA:   3'- caUGUGGCgGCUCGa---------GCGCCGG----UGGG- -5'
31006 5' -61 NC_006560.1 + 2219 0.66 0.713571
Target:  5'- -aGCGCCagguagaCGGGCcgcaGCGGCgCACCCa -3'
miRNA:   3'- caUGUGGcg-----GCUCGag--CGCCG-GUGGG- -5'
31006 5' -61 NC_006560.1 + 2280 0.7 0.451709
Target:  5'- aGUGCGCCucgccgcggcggaaGUCGGGCgcgccggCgGCGGCCGCCUc -3'
miRNA:   3'- -CAUGUGG--------------CGGCUCGa------G-CGCCGGUGGG- -5'
31006 5' -61 NC_006560.1 + 2349 0.66 0.700058
Target:  5'- -cGCgGCCGUCGAGCgcgggcagcacggCGCGGCggUACUCg -3'
miRNA:   3'- caUG-UGGCGGCUCGa------------GCGCCG--GUGGG- -5'
31006 5' -61 NC_006560.1 + 2706 0.67 0.62544
Target:  5'- -gGCgGCgGCCG-GCg-GCGGCCGCCa -3'
miRNA:   3'- caUG-UGgCGGCuCGagCGCCGGUGGg -5'
31006 5' -61 NC_006560.1 + 2941 0.76 0.215939
Target:  5'- -gACGCCGCCGAGCUCcucgccgggcaGCGGCgcguagagCACCa -3'
miRNA:   3'- caUGUGGCGGCUCGAG-----------CGCCG--------GUGGg -5'
31006 5' -61 NC_006560.1 + 3058 0.69 0.528048
Target:  5'- -aGCGgC-CCGAGggCGCGGCCggaGCCCg -3'
miRNA:   3'- caUGUgGcGGCUCgaGCGCCGG---UGGG- -5'
31006 5' -61 NC_006560.1 + 3412 0.76 0.215939
Target:  5'- -cGCGCCGgCGGGCgggcggcgggCGCGGgCGCCCg -3'
miRNA:   3'- caUGUGGCgGCUCGa---------GCGCCgGUGGG- -5'
31006 5' -61 NC_006560.1 + 3574 0.67 0.63926
Target:  5'- -cGCACCuGCCGcgGGCUgcgggccagcagcggCGCGGCgGCgCCg -3'
miRNA:   3'- caUGUGG-CGGC--UCGA---------------GCGCCGgUG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.