miRNA display CGI


Results 1 - 20 of 554 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31006 5' -61 NC_006560.1 + 150513 0.66 0.674702
Target:  5'- -gGCcCCGCCGGcguuuuuuuccGCgCGCGcGCCGCCg -3'
miRNA:   3'- caUGuGGCGGCU-----------CGaGCGC-CGGUGGg -5'
31006 5' -61 NC_006560.1 + 150305 0.69 0.499825
Target:  5'- -cGCGCCGCCGcgggagGGC-C-CGGCCcCCCg -3'
miRNA:   3'- caUGUGGCGGC------UCGaGcGCCGGuGGG- -5'
31006 5' -61 NC_006560.1 + 150225 0.75 0.248562
Target:  5'- -gACGCUGCCGGGCgUGCuGGUUGCCCg -3'
miRNA:   3'- caUGUGGCGGCUCGaGCG-CCGGUGGG- -5'
31006 5' -61 NC_006560.1 + 150083 0.68 0.609658
Target:  5'- -cGCGcCCGCCgcGAGCUCgggcagcaggcgcgaGCGcCCACCCg -3'
miRNA:   3'- caUGU-GGCGG--CUCGAG---------------CGCcGGUGGG- -5'
31006 5' -61 NC_006560.1 + 149988 0.66 0.703931
Target:  5'- -cGCGCUaccgggGCCGcGCUCgggaccgcggGCGGCgCACCCc -3'
miRNA:   3'- caUGUGG------CGGCuCGAG----------CGCCG-GUGGG- -5'
31006 5' -61 NC_006560.1 + 149810 0.69 0.499825
Target:  5'- cGUGCGCaaggggggGCgGAGgcggcCUCGCGGCC-CCCg -3'
miRNA:   3'- -CAUGUGg-------CGgCUC-----GAGCGCCGGuGGG- -5'
31006 5' -61 NC_006560.1 + 149263 0.66 0.721238
Target:  5'- -gGCuuCCGCCGGGCgccucccccuCGGCCcGCCCc -3'
miRNA:   3'- caUGu-GGCGGCUCGagc-------GCCGG-UGGG- -5'
31006 5' -61 NC_006560.1 + 149139 0.7 0.472291
Target:  5'- -gGCuCCGCCGcGGCgCGgGGCgGCCCc -3'
miRNA:   3'- caUGuGGCGGC-UCGaGCgCCGgUGGG- -5'
31006 5' -61 NC_006560.1 + 148679 0.68 0.595881
Target:  5'- -gGCGCCG-UGGGCggcccCGgGGCCGCCg -3'
miRNA:   3'- caUGUGGCgGCUCGa----GCgCCGGUGGg -5'
31006 5' -61 NC_006560.1 + 147730 0.7 0.43595
Target:  5'- uGUACgaGCCGUCGGGCUucaCGCccacgaugagauaGGCCACCa -3'
miRNA:   3'- -CAUG--UGGCGGCUCGA---GCG-------------CCGGUGGg -5'
31006 5' -61 NC_006560.1 + 146993 0.69 0.509162
Target:  5'- -gGCAUgGC--GGCUCGCGGCCGCg- -3'
miRNA:   3'- caUGUGgCGgcUCGAGCGCCGGUGgg -5'
31006 5' -61 NC_006560.1 + 146849 0.66 0.713571
Target:  5'- -gGCGgCGCgGGGCgggGCGGC-GCCCg -3'
miRNA:   3'- caUGUgGCGgCUCGag-CGCCGgUGGG- -5'
31006 5' -61 NC_006560.1 + 146289 0.67 0.655041
Target:  5'- -gACGCCGCgGGGg-CGCGGUCGgcgUCCa -3'
miRNA:   3'- caUGUGGCGgCUCgaGCGCCGGU---GGG- -5'
31006 5' -61 NC_006560.1 + 145943 0.71 0.42819
Target:  5'- -cAgGCUGUgGaAGCU-GCGGCCGCCCa -3'
miRNA:   3'- caUgUGGCGgC-UCGAgCGCCGGUGGG- -5'
31006 5' -61 NC_006560.1 + 145815 0.67 0.635312
Target:  5'- -gGCACaCGCCcGGCcucgCGCGGCgGgCCg -3'
miRNA:   3'- caUGUG-GCGGcUCGa---GCGCCGgUgGG- -5'
31006 5' -61 NC_006560.1 + 145545 0.67 0.664884
Target:  5'- --uCGgCGCCGGGgaCGCccGGCCccGCCCg -3'
miRNA:   3'- cauGUgGCGGCUCgaGCG--CCGG--UGGG- -5'
31006 5' -61 NC_006560.1 + 145049 0.66 0.684488
Target:  5'- cGUGcCGCCGCCGG----GCGGCCuccuCCCc -3'
miRNA:   3'- -CAU-GUGGCGGCUcgagCGCCGGu---GGG- -5'
31006 5' -61 NC_006560.1 + 144760 0.72 0.378626
Target:  5'- cGU-CGCCGCCG-GCggCGaCGGCC-CCCu -3'
miRNA:   3'- -CAuGUGGCGGCuCGa-GC-GCCGGuGGG- -5'
31006 5' -61 NC_006560.1 + 144510 0.67 0.615573
Target:  5'- -cGCgGCCGCCuuccccgcGGGCcccuucccCGCGGCCGCCUu -3'
miRNA:   3'- caUG-UGGCGG--------CUCGa-------GCGCCGGUGGG- -5'
31006 5' -61 NC_006560.1 + 144361 0.67 0.655041
Target:  5'- ---gGCCGCgGGGC-CGCGGCgGCa- -3'
miRNA:   3'- caugUGGCGgCUCGaGCGCCGgUGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.