miRNA display CGI


Results 41 - 60 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31007 3' -57 NC_006560.1 + 27384 0.68 0.780618
Target:  5'- cGCGGCgCGGgGggCCGGGcCcuCCCg -3'
miRNA:   3'- aCGUCGgGCCaCaaGGUCCaGuuGGG- -5'
31007 3' -57 NC_006560.1 + 95956 0.68 0.771347
Target:  5'- cGCGG-CCGGcGggCCGGaGUCGacGCCCg -3'
miRNA:   3'- aCGUCgGGCCaCaaGGUC-CAGU--UGGG- -5'
31007 3' -57 NC_006560.1 + 146613 0.68 0.771347
Target:  5'- uUGCgGGCCUGGg--UCUGGGUCugcgucugAGCCCg -3'
miRNA:   3'- -ACG-UCGGGCCacaAGGUCCAG--------UUGGG- -5'
31007 3' -57 NC_006560.1 + 112861 0.68 0.771347
Target:  5'- gGCccgAGCUCGGcgg-CCAGGcgCAGCCCg -3'
miRNA:   3'- aCG---UCGGGCCacaaGGUCCa-GUUGGG- -5'
31007 3' -57 NC_006560.1 + 81725 0.68 0.771347
Target:  5'- gGCgAGCCCGGUGgcCUcGGUgGACUg -3'
miRNA:   3'- aCG-UCGGGCCACaaGGuCCAgUUGGg -5'
31007 3' -57 NC_006560.1 + 66263 0.68 0.761952
Target:  5'- -aCAGCUCGGcg-UCCAGGUCGAUg- -3'
miRNA:   3'- acGUCGGGCCacaAGGUCCAGUUGgg -5'
31007 3' -57 NC_006560.1 + 17804 0.68 0.752444
Target:  5'- gGCcGCCCGGc-UUCCucGGUCGcGCCCg -3'
miRNA:   3'- aCGuCGGGCCacAAGGu-CCAGU-UGGG- -5'
31007 3' -57 NC_006560.1 + 73984 0.68 0.752444
Target:  5'- gGCGGCgCGGgc--CCGGGUCcccGCCCc -3'
miRNA:   3'- aCGUCGgGCCacaaGGUCCAGu--UGGG- -5'
31007 3' -57 NC_006560.1 + 129207 0.68 0.742831
Target:  5'- gGCGGCCCGGU----CGGGcgCAACCg -3'
miRNA:   3'- aCGUCGGGCCAcaagGUCCa-GUUGGg -5'
31007 3' -57 NC_006560.1 + 149488 0.68 0.741864
Target:  5'- gGCGGCCCGGgccgacgcuccccgcCCGGGccgcCGGCCCg -3'
miRNA:   3'- aCGUCGGGCCacaa-----------GGUCCa---GUUGGG- -5'
31007 3' -57 NC_006560.1 + 122546 0.69 0.737016
Target:  5'- cUGCGGgCCGG-GUUCUcgcgguggcgacugaGccGGUCGGCCCg -3'
miRNA:   3'- -ACGUCgGGCCaCAAGG---------------U--CCAGUUGGG- -5'
31007 3' -57 NC_006560.1 + 55449 0.69 0.733122
Target:  5'- gGCgAGCCCGGggcgcCCGGGgCAggGCCCg -3'
miRNA:   3'- aCG-UCGGGCCacaa-GGUCCaGU--UGGG- -5'
31007 3' -57 NC_006560.1 + 117473 0.69 0.732146
Target:  5'- cGCgAGCCCGGgcgUCCGGGcUCGcugguccACCUg -3'
miRNA:   3'- aCG-UCGGGCCacaAGGUCC-AGU-------UGGG- -5'
31007 3' -57 NC_006560.1 + 133220 0.69 0.713453
Target:  5'- cGCAG-CCGGcGgUCCGGcgugacGUCAACCCg -3'
miRNA:   3'- aCGUCgGGCCaCaAGGUC------CAGUUGGG- -5'
31007 3' -57 NC_006560.1 + 90678 0.69 0.710477
Target:  5'- cGcCGGCCUGGUGggcgCCAuGGUCuucggcaccaacucGGCCCu -3'
miRNA:   3'- aC-GUCGGGCCACaa--GGU-CCAG--------------UUGGG- -5'
31007 3' -57 NC_006560.1 + 123290 0.69 0.702514
Target:  5'- cGCAGCcgccgccCCGGgGUUCCGGGaCGcuggacauGCCCg -3'
miRNA:   3'- aCGUCG-------GGCCaCAAGGUCCaGU--------UGGG- -5'
31007 3' -57 NC_006560.1 + 67544 0.69 0.69351
Target:  5'- cGCcGCUCGGUG-UCgGGGaUCGACCg -3'
miRNA:   3'- aCGuCGGGCCACaAGgUCC-AGUUGGg -5'
31007 3' -57 NC_006560.1 + 58060 0.69 0.69351
Target:  5'- cGCGGCCgGGU----CAGGaCAGCCCg -3'
miRNA:   3'- aCGUCGGgCCAcaagGUCCaGUUGGG- -5'
31007 3' -57 NC_006560.1 + 40540 0.69 0.69351
Target:  5'- gGCGGgCCGGUGguacaggaaggUCacgGGGUCGGCCUc -3'
miRNA:   3'- aCGUCgGGCCACa----------AGg--UCCAGUUGGG- -5'
31007 3' -57 NC_006560.1 + 140375 0.7 0.683459
Target:  5'- cGCGGCCCGaGg--UCC-GGUCGuCCCc -3'
miRNA:   3'- aCGUCGGGC-CacaAGGuCCAGUuGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.