miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31007 3' -57 NC_006560.1 + 150441 0.66 0.857135
Target:  5'- cGCGGCCgCGGccggcgcggguuUGggCgGGGcCGGCCCc -3'
miRNA:   3'- aCGUCGG-GCC------------ACaaGgUCCaGUUGGG- -5'
31007 3' -57 NC_006560.1 + 4770 0.66 0.849344
Target:  5'- gGCGGCgCGGgg-UCCGGGUcCGAgUCg -3'
miRNA:   3'- aCGUCGgGCCacaAGGUCCA-GUUgGG- -5'
31007 3' -57 NC_006560.1 + 134203 0.66 0.849344
Target:  5'- cUGCuGGCgCGGgcccgCgGGGUCGGCCCc -3'
miRNA:   3'- -ACG-UCGgGCCacaa-GgUCCAGUUGGG- -5'
31007 3' -57 NC_006560.1 + 2069 0.67 0.841359
Target:  5'- cGCGGCgCGGcGgcggggUCCGGGg--GCCCg -3'
miRNA:   3'- aCGUCGgGCCaCa-----AGGUCCaguUGGG- -5'
31007 3' -57 NC_006560.1 + 23804 0.67 0.841359
Target:  5'- cGCAGCCCgcggcaGGUGcgCUccGUCGGCgCCg -3'
miRNA:   3'- aCGUCGGG------CCACaaGGucCAGUUG-GG- -5'
31007 3' -57 NC_006560.1 + 86276 0.67 0.841359
Target:  5'- cGCauGGCCgCGGcc-UCCGGGaagUCGGCCCg -3'
miRNA:   3'- aCG--UCGG-GCCacaAGGUCC---AGUUGGG- -5'
31007 3' -57 NC_006560.1 + 46048 0.67 0.833185
Target:  5'- cGCcaCCCGGaGaUCCAGGggGACCCg -3'
miRNA:   3'- aCGucGGGCCaCaAGGUCCagUUGGG- -5'
31007 3' -57 NC_006560.1 + 35289 0.67 0.833185
Target:  5'- cGgGGCCCGGgg-UCCGGGggcgCGGCg- -3'
miRNA:   3'- aCgUCGGGCCacaAGGUCCa---GUUGgg -5'
31007 3' -57 NC_006560.1 + 34957 0.67 0.833185
Target:  5'- cGgGGCCCGG-GcgCCGGGcUCcGCCg -3'
miRNA:   3'- aCgUCGGGCCaCaaGGUCC-AGuUGGg -5'
31007 3' -57 NC_006560.1 + 60000 0.67 0.82483
Target:  5'- gUGCAGCCUccuccgGGUGUUcgcCCAGaa-GGCCCu -3'
miRNA:   3'- -ACGUCGGG------CCACAA---GGUCcagUUGGG- -5'
31007 3' -57 NC_006560.1 + 101371 0.67 0.82483
Target:  5'- gGCGGCgaggCCGGgaaacagCUGGGUCAGCUCg -3'
miRNA:   3'- aCGUCG----GGCCacaa---GGUCCAGUUGGG- -5'
31007 3' -57 NC_006560.1 + 5354 0.67 0.82483
Target:  5'- gGCGGgCCGucg-UCCGGGUCcggcgAGCCCg -3'
miRNA:   3'- aCGUCgGGCcacaAGGUCCAG-----UUGGG- -5'
31007 3' -57 NC_006560.1 + 148879 0.67 0.816302
Target:  5'- gGCGGCCCccgGGgaucUUCCGGGcUCucCCCg -3'
miRNA:   3'- aCGUCGGG---CCac--AAGGUCC-AGuuGGG- -5'
31007 3' -57 NC_006560.1 + 88213 0.67 0.816302
Target:  5'- gGCAGCCCaGccg-CC-GGUCGACCUc -3'
miRNA:   3'- aCGUCGGGcCacaaGGuCCAGUUGGG- -5'
31007 3' -57 NC_006560.1 + 27085 0.67 0.807609
Target:  5'- uUGCGGCCUGG-GgaCCGaagcGGgccucgCGACCCg -3'
miRNA:   3'- -ACGUCGGGCCaCaaGGU----CCa-----GUUGGG- -5'
31007 3' -57 NC_006560.1 + 121731 0.67 0.807609
Target:  5'- gGCAGCCCGGcgGgggcgUCCg---CGGCCCc -3'
miRNA:   3'- aCGUCGGGCCa-Ca----AGGuccaGUUGGG- -5'
31007 3' -57 NC_006560.1 + 134254 0.67 0.807609
Target:  5'- cGCGGCCCgcccgaagccGGgcaGggCgGGGUCGACCg -3'
miRNA:   3'- aCGUCGGG----------CCa--CaaGgUCCAGUUGGg -5'
31007 3' -57 NC_006560.1 + 121287 0.68 0.789759
Target:  5'- aGCGGCCCGGcGUccUCCucggagAGGcuggaGGCCCg -3'
miRNA:   3'- aCGUCGGGCCaCA--AGG------UCCag---UUGGG- -5'
31007 3' -57 NC_006560.1 + 7412 0.68 0.789759
Target:  5'- cGcCGGcCCCGGgaccCCAGG-CAGCCCc -3'
miRNA:   3'- aC-GUC-GGGCCacaaGGUCCaGUUGGG- -5'
31007 3' -57 NC_006560.1 + 78237 0.68 0.780618
Target:  5'- gGCGcGCCUGGggucGggCCGGGccccCGACCCg -3'
miRNA:   3'- aCGU-CGGGCCa---CaaGGUCCa---GUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.