miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31007 3' -57 NC_006560.1 + 27384 0.68 0.780618
Target:  5'- cGCGGCgCGGgGggCCGGGcCcuCCCg -3'
miRNA:   3'- aCGUCGgGCCaCaaGGUCCaGuuGGG- -5'
31007 3' -57 NC_006560.1 + 27832 0.66 0.857135
Target:  5'- cGCGGCCgGGgGUgCCGGGgguGCCg -3'
miRNA:   3'- aCGUCGGgCCaCAaGGUCCaguUGGg -5'
31007 3' -57 NC_006560.1 + 28203 0.73 0.502958
Target:  5'- gGCGGCCCGGg---CgGGGagcgUCGGCCCg -3'
miRNA:   3'- aCGUCGGGCCacaaGgUCC----AGUUGGG- -5'
31007 3' -57 NC_006560.1 + 29347 0.71 0.591094
Target:  5'- cGCGGCCuCGGagccCCGGGUCGcuccuccGCCCa -3'
miRNA:   3'- aCGUCGG-GCCacaaGGUCCAGU-------UGGG- -5'
31007 3' -57 NC_006560.1 + 30797 0.71 0.622564
Target:  5'- aGUcaAGCCCGGgc--CCAGG-CGGCCCu -3'
miRNA:   3'- aCG--UCGGGCCacaaGGUCCaGUUGGG- -5'
31007 3' -57 NC_006560.1 + 32657 0.72 0.551927
Target:  5'- gGCcGCCCGGcGgcggcaCgGGGUCGGCCCa -3'
miRNA:   3'- aCGuCGGGCCaCaa----GgUCCAGUUGGG- -5'
31007 3' -57 NC_006560.1 + 33512 0.7 0.663238
Target:  5'- cGcCGGCCCGGgggUCgGGGUCAcGCCg -3'
miRNA:   3'- aC-GUCGGGCCacaAGgUCCAGU-UGGg -5'
31007 3' -57 NC_006560.1 + 34957 0.67 0.833185
Target:  5'- cGgGGCCCGG-GcgCCGGGcUCcGCCg -3'
miRNA:   3'- aCgUCGGGCCaCaaGGUCC-AGuUGGg -5'
31007 3' -57 NC_006560.1 + 35289 0.67 0.833185
Target:  5'- cGgGGCCCGGgg-UCCGGGggcgCGGCg- -3'
miRNA:   3'- aCgUCGGGCCacaAGGUCCa---GUUGgg -5'
31007 3' -57 NC_006560.1 + 35762 0.76 0.338513
Target:  5'- gUGCAGCUCGGUGUUCCu--UCGccugacGCCCg -3'
miRNA:   3'- -ACGUCGGGCCACAAGGuccAGU------UGGG- -5'
31007 3' -57 NC_006560.1 + 38711 0.71 0.602239
Target:  5'- cGCAGCCgGGUGc-UCAGGUucucgaggaCGGCCCc -3'
miRNA:   3'- aCGUCGGgCCACaaGGUCCA---------GUUGGG- -5'
31007 3' -57 NC_006560.1 + 39848 0.66 0.864725
Target:  5'- -cCAGCCCGaG-GUcgaccagcaugUCCAGGUCGGCggCCa -3'
miRNA:   3'- acGUCGGGC-CaCA-----------AGGUCCAGUUG--GG- -5'
31007 3' -57 NC_006560.1 + 40540 0.69 0.69351
Target:  5'- gGCGGgCCGGUGguacaggaaggUCacgGGGUCGGCCUc -3'
miRNA:   3'- aCGUCgGGCCACa----------AGg--UCCAGUUGGG- -5'
31007 3' -57 NC_006560.1 + 46048 0.67 0.833185
Target:  5'- cGCcaCCCGGaGaUCCAGGggGACCCg -3'
miRNA:   3'- aCGucGGGCCaCaAGGUCCagUUGGG- -5'
31007 3' -57 NC_006560.1 + 46555 0.66 0.864725
Target:  5'- --aAGCCgGGgcgccgUCCGGGUCGcagACCCc -3'
miRNA:   3'- acgUCGGgCCaca---AGGUCCAGU---UGGG- -5'
31007 3' -57 NC_006560.1 + 50916 0.66 0.872108
Target:  5'- cUGCAGCCCGucgaGgccUCCGcGGUCccccugcuggcGACCCg -3'
miRNA:   3'- -ACGUCGGGCca--Ca--AGGU-CCAG-----------UUGGG- -5'
31007 3' -57 NC_006560.1 + 55449 0.69 0.733122
Target:  5'- gGCgAGCCCGGggcgcCCGGGgCAggGCCCg -3'
miRNA:   3'- aCG-UCGGGCCacaa-GGUCCaGU--UGGG- -5'
31007 3' -57 NC_006560.1 + 58060 0.69 0.69351
Target:  5'- cGCGGCCgGGU----CAGGaCAGCCCg -3'
miRNA:   3'- aCGUCGGgCCAcaagGUCCaGUUGGG- -5'
31007 3' -57 NC_006560.1 + 59350 0.66 0.872108
Target:  5'- cGgGGCCCGGUcGgccgUCuCGGGgacgUCAGCCa -3'
miRNA:   3'- aCgUCGGGCCA-Ca---AG-GUCC----AGUUGGg -5'
31007 3' -57 NC_006560.1 + 60000 0.67 0.82483
Target:  5'- gUGCAGCCUccuccgGGUGUUcgcCCAGaa-GGCCCu -3'
miRNA:   3'- -ACGUCGGG------CCACAA---GGUCcagUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.