miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31007 3' -57 NC_006560.1 + 112 0.66 0.857135
Target:  5'- cGCGGCCgCGGccggcgcggguuUGggCgGGGcCGGCCCc -3'
miRNA:   3'- aCGUCGG-GCC------------ACaaGgUCCaGUUGGG- -5'
31007 3' -57 NC_006560.1 + 258 0.74 0.437854
Target:  5'- cUGCGuCUCGGUGgaggCCGGGUCGcgagGCCCg -3'
miRNA:   3'- -ACGUcGGGCCACaa--GGUCCAGU----UGGG- -5'
31007 3' -57 NC_006560.1 + 1139 0.66 0.864725
Target:  5'- -cCGGCCCGGccuccgggGUUCCuGG-CGGCCg -3'
miRNA:   3'- acGUCGGGCCa-------CAAGGuCCaGUUGGg -5'
31007 3' -57 NC_006560.1 + 2069 0.67 0.841359
Target:  5'- cGCGGCgCGGcGgcggggUCCGGGg--GCCCg -3'
miRNA:   3'- aCGUCGgGCCaCa-----AGGUCCaguUGGG- -5'
31007 3' -57 NC_006560.1 + 2819 0.66 0.857135
Target:  5'- gGgGGCCCGGUccaGUUgccggcCCAGG-CGGCCg -3'
miRNA:   3'- aCgUCGGGCCA---CAA------GGUCCaGUUGGg -5'
31007 3' -57 NC_006560.1 + 4770 0.66 0.849344
Target:  5'- gGCGGCgCGGgg-UCCGGGUcCGAgUCg -3'
miRNA:   3'- aCGUCGgGCCacaAGGUCCA-GUUgGG- -5'
31007 3' -57 NC_006560.1 + 4821 0.71 0.592105
Target:  5'- --gAGCCCGGg--UCCGGGUCGGggUCCg -3'
miRNA:   3'- acgUCGGGCCacaAGGUCCAGUU--GGG- -5'
31007 3' -57 NC_006560.1 + 5354 0.67 0.82483
Target:  5'- gGCGGgCCGucg-UCCGGGUCcggcgAGCCCg -3'
miRNA:   3'- aCGUCgGGCcacaAGGUCCAG-----UUGGG- -5'
31007 3' -57 NC_006560.1 + 7412 0.68 0.789759
Target:  5'- cGcCGGcCCCGGgaccCCAGG-CAGCCCc -3'
miRNA:   3'- aC-GUC-GGGCCacaaGGUCCaGUUGGG- -5'
31007 3' -57 NC_006560.1 + 10484 0.7 0.663238
Target:  5'- cGgGGCCCGGggcggGggCCccgucGGGUCGGCCg -3'
miRNA:   3'- aCgUCGGGCCa----CaaGG-----UCCAGUUGGg -5'
31007 3' -57 NC_006560.1 + 14097 0.7 0.673365
Target:  5'- gGCAGCaCCGGUGg---AGGaCGGCCCc -3'
miRNA:   3'- aCGUCG-GGCCACaaggUCCaGUUGGG- -5'
31007 3' -57 NC_006560.1 + 14807 0.66 0.879277
Target:  5'- gGgGGCUCGG-GggCCggaGGGUCAgcggACCCa -3'
miRNA:   3'- aCgUCGGGCCaCaaGG---UCCAGU----UGGG- -5'
31007 3' -57 NC_006560.1 + 15527 0.66 0.875001
Target:  5'- gGcCAGCCgGGUGaacauguacccggCCAGGcCGACCa -3'
miRNA:   3'- aC-GUCGGgCCACaa-----------GGUCCaGUUGGg -5'
31007 3' -57 NC_006560.1 + 15903 0.66 0.857135
Target:  5'- aGCAGCgaGGcGUUcaCCAGGgcgUGGCCCg -3'
miRNA:   3'- aCGUCGggCCaCAA--GGUCCa--GUUGGG- -5'
31007 3' -57 NC_006560.1 + 16032 0.66 0.857135
Target:  5'- cGgGGCgCCGGcaccccCCGGcGUCGACCCg -3'
miRNA:   3'- aCgUCG-GGCCacaa--GGUC-CAGUUGGG- -5'
31007 3' -57 NC_006560.1 + 17804 0.68 0.752444
Target:  5'- gGCcGCCCGGc-UUCCucGGUCGcGCCCg -3'
miRNA:   3'- aCGuCGGGCCacAAGGu-CCAGU-UGGG- -5'
31007 3' -57 NC_006560.1 + 19535 0.66 0.857135
Target:  5'- cGgAGCCCGGggcGUUCUccuccGG-CGGCCCc -3'
miRNA:   3'- aCgUCGGGCCa--CAAGGu----CCaGUUGGG- -5'
31007 3' -57 NC_006560.1 + 23804 0.67 0.841359
Target:  5'- cGCAGCCCgcggcaGGUGcgCUccGUCGGCgCCg -3'
miRNA:   3'- aCGUCGGG------CCACaaGGucCAGUUG-GG- -5'
31007 3' -57 NC_006560.1 + 24366 0.75 0.402887
Target:  5'- cGCcGCCUGGaUGcgCCAGGUCcccgAGCCCg -3'
miRNA:   3'- aCGuCGGGCC-ACaaGGUCCAG----UUGGG- -5'
31007 3' -57 NC_006560.1 + 27085 0.67 0.807609
Target:  5'- uUGCGGCCUGG-GgaCCGaagcGGgccucgCGACCCg -3'
miRNA:   3'- -ACGUCGGGCCaCaaGGU----CCa-----GUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.