miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31007 3' -57 NC_006560.1 + 122725 1.12 0.001383
Target:  5'- cUGCAGCCCGGUGUUCCAGGUCAACCCg -3'
miRNA:   3'- -ACGUCGGGCCACAAGGUCCAGUUGGG- -5'
31007 3' -57 NC_006560.1 + 35762 0.76 0.338513
Target:  5'- gUGCAGCUCGGUGUUCCu--UCGccugacGCCCg -3'
miRNA:   3'- -ACGUCGGGCCACAAGGuccAGU------UGGG- -5'
31007 3' -57 NC_006560.1 + 24366 0.75 0.402887
Target:  5'- cGCcGCCUGGaUGcgCCAGGUCcccgAGCCCg -3'
miRNA:   3'- aCGuCGGGCC-ACaaGGUCCAG----UUGGG- -5'
31007 3' -57 NC_006560.1 + 258 0.74 0.437854
Target:  5'- cUGCGuCUCGGUGgaggCCGGGUCGcgagGCCCg -3'
miRNA:   3'- -ACGUcGGGCCACaa--GGUCCAGU----UGGG- -5'
31007 3' -57 NC_006560.1 + 28203 0.73 0.502958
Target:  5'- gGCGGCCCGGg---CgGGGagcgUCGGCCCg -3'
miRNA:   3'- aCGUCGGGCCacaaGgUCC----AGUUGGG- -5'
31007 3' -57 NC_006560.1 + 86643 0.72 0.512611
Target:  5'- cGCGGCCCGGc--UCCAGGcCcGCCa -3'
miRNA:   3'- aCGUCGGGCCacaAGGUCCaGuUGGg -5'
31007 3' -57 NC_006560.1 + 32657 0.72 0.551927
Target:  5'- gGCcGCCCGGcGgcggcaCgGGGUCGGCCCa -3'
miRNA:   3'- aCGuCGGGCCaCaa----GgUCCAGUUGGG- -5'
31007 3' -57 NC_006560.1 + 125091 0.72 0.557908
Target:  5'- cGCccGGCCCGGcGUgcgcuacuucgccCCGGGUCAgguGCCCg -3'
miRNA:   3'- aCG--UCGGGCCaCAa------------GGUCCAGU---UGGG- -5'
31007 3' -57 NC_006560.1 + 66707 0.71 0.580992
Target:  5'- gGCGGCCCGGgggggcGUgcugCCGGGcCAgggccgggaagucGCCCg -3'
miRNA:   3'- aCGUCGGGCCa-----CAa---GGUCCaGU-------------UGGG- -5'
31007 3' -57 NC_006560.1 + 29347 0.71 0.591094
Target:  5'- cGCGGCCuCGGagccCCGGGUCGcuccuccGCCCa -3'
miRNA:   3'- aCGUCGG-GCCacaaGGUCCAGU-------UGGG- -5'
31007 3' -57 NC_006560.1 + 4821 0.71 0.592105
Target:  5'- --gAGCCCGGg--UCCGGGUCGGggUCCg -3'
miRNA:   3'- acgUCGGGCCacaAGGUCCAGUU--GGG- -5'
31007 3' -57 NC_006560.1 + 38711 0.71 0.602239
Target:  5'- cGCAGCCgGGUGc-UCAGGUucucgaggaCGGCCCc -3'
miRNA:   3'- aCGUCGGgCCACaaGGUCCA---------GUUGGG- -5'
31007 3' -57 NC_006560.1 + 65178 0.71 0.612394
Target:  5'- cGCGGuCCCGGUG-UCCccGUCGACgaCCa -3'
miRNA:   3'- aCGUC-GGGCCACaAGGucCAGUUG--GG- -5'
31007 3' -57 NC_006560.1 + 30797 0.71 0.622564
Target:  5'- aGUcaAGCCCGGgc--CCAGG-CGGCCCu -3'
miRNA:   3'- aCG--UCGGGCCacaaGGUCCaGUUGGG- -5'
31007 3' -57 NC_006560.1 + 107983 0.7 0.632741
Target:  5'- gGCGGCgCCGGgacGUcggCCGGGUCGucGCCg -3'
miRNA:   3'- aCGUCG-GGCCa--CAa--GGUCCAGU--UGGg -5'
31007 3' -57 NC_006560.1 + 10484 0.7 0.663238
Target:  5'- cGgGGCCCGGggcggGggCCccgucGGGUCGGCCg -3'
miRNA:   3'- aCgUCGGGCCa----CaaGG-----UCCAGUUGGg -5'
31007 3' -57 NC_006560.1 + 33512 0.7 0.663238
Target:  5'- cGcCGGCCCGGgggUCgGGGUCAcGCCg -3'
miRNA:   3'- aC-GUCGGGCCacaAGgUCCAGU-UGGg -5'
31007 3' -57 NC_006560.1 + 14097 0.7 0.673365
Target:  5'- gGCAGCaCCGGUGg---AGGaCGGCCCc -3'
miRNA:   3'- aCGUCG-GGCCACaaggUCCaGUUGGG- -5'
31007 3' -57 NC_006560.1 + 81283 0.7 0.673365
Target:  5'- gGCGGCCCGGcgg-CCGGGcCGccGCCUu -3'
miRNA:   3'- aCGUCGGGCCacaaGGUCCaGU--UGGG- -5'
31007 3' -57 NC_006560.1 + 70181 0.7 0.677407
Target:  5'- gGCGGCCCGGggcGUgcUcgccgaccucgucgcCCGGGcCGACCCc -3'
miRNA:   3'- aCGUCGGGCCa--CA--A---------------GGUCCaGUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.