Results 21 - 40 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31007 | 3' | -57 | NC_006560.1 | + | 140375 | 0.7 | 0.683459 |
Target: 5'- cGCGGCCCGaGg--UCC-GGUCGuCCCc -3' miRNA: 3'- aCGUCGGGC-CacaAGGuCCAGUuGGG- -5' |
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31007 | 3' | -57 | NC_006560.1 | + | 40540 | 0.69 | 0.69351 |
Target: 5'- gGCGGgCCGGUGguacaggaaggUCacgGGGUCGGCCUc -3' miRNA: 3'- aCGUCgGGCCACa----------AGg--UCCAGUUGGG- -5' |
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31007 | 3' | -57 | NC_006560.1 | + | 58060 | 0.69 | 0.69351 |
Target: 5'- cGCGGCCgGGU----CAGGaCAGCCCg -3' miRNA: 3'- aCGUCGGgCCAcaagGUCCaGUUGGG- -5' |
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31007 | 3' | -57 | NC_006560.1 | + | 67544 | 0.69 | 0.69351 |
Target: 5'- cGCcGCUCGGUG-UCgGGGaUCGACCg -3' miRNA: 3'- aCGuCGGGCCACaAGgUCC-AGUUGGg -5' |
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31007 | 3' | -57 | NC_006560.1 | + | 123290 | 0.69 | 0.702514 |
Target: 5'- cGCAGCcgccgccCCGGgGUUCCGGGaCGcuggacauGCCCg -3' miRNA: 3'- aCGUCG-------GGCCaCAAGGUCCaGU--------UGGG- -5' |
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31007 | 3' | -57 | NC_006560.1 | + | 90678 | 0.69 | 0.710477 |
Target: 5'- cGcCGGCCUGGUGggcgCCAuGGUCuucggcaccaacucGGCCCu -3' miRNA: 3'- aC-GUCGGGCCACaa--GGU-CCAG--------------UUGGG- -5' |
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31007 | 3' | -57 | NC_006560.1 | + | 133220 | 0.69 | 0.713453 |
Target: 5'- cGCAG-CCGGcGgUCCGGcgugacGUCAACCCg -3' miRNA: 3'- aCGUCgGGCCaCaAGGUC------CAGUUGGG- -5' |
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31007 | 3' | -57 | NC_006560.1 | + | 117473 | 0.69 | 0.732146 |
Target: 5'- cGCgAGCCCGGgcgUCCGGGcUCGcugguccACCUg -3' miRNA: 3'- aCG-UCGGGCCacaAGGUCC-AGU-------UGGG- -5' |
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31007 | 3' | -57 | NC_006560.1 | + | 55449 | 0.69 | 0.733122 |
Target: 5'- gGCgAGCCCGGggcgcCCGGGgCAggGCCCg -3' miRNA: 3'- aCG-UCGGGCCacaa-GGUCCaGU--UGGG- -5' |
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31007 | 3' | -57 | NC_006560.1 | + | 122546 | 0.69 | 0.737016 |
Target: 5'- cUGCGGgCCGG-GUUCUcgcgguggcgacugaGccGGUCGGCCCg -3' miRNA: 3'- -ACGUCgGGCCaCAAGG---------------U--CCAGUUGGG- -5' |
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31007 | 3' | -57 | NC_006560.1 | + | 149488 | 0.68 | 0.741864 |
Target: 5'- gGCGGCCCGGgccgacgcuccccgcCCGGGccgcCGGCCCg -3' miRNA: 3'- aCGUCGGGCCacaa-----------GGUCCa---GUUGGG- -5' |
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31007 | 3' | -57 | NC_006560.1 | + | 129207 | 0.68 | 0.742831 |
Target: 5'- gGCGGCCCGGU----CGGGcgCAACCg -3' miRNA: 3'- aCGUCGGGCCAcaagGUCCa-GUUGGg -5' |
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31007 | 3' | -57 | NC_006560.1 | + | 17804 | 0.68 | 0.752444 |
Target: 5'- gGCcGCCCGGc-UUCCucGGUCGcGCCCg -3' miRNA: 3'- aCGuCGGGCCacAAGGu-CCAGU-UGGG- -5' |
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31007 | 3' | -57 | NC_006560.1 | + | 73984 | 0.68 | 0.752444 |
Target: 5'- gGCGGCgCGGgc--CCGGGUCcccGCCCc -3' miRNA: 3'- aCGUCGgGCCacaaGGUCCAGu--UGGG- -5' |
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31007 | 3' | -57 | NC_006560.1 | + | 66263 | 0.68 | 0.761952 |
Target: 5'- -aCAGCUCGGcg-UCCAGGUCGAUg- -3' miRNA: 3'- acGUCGGGCCacaAGGUCCAGUUGgg -5' |
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31007 | 3' | -57 | NC_006560.1 | + | 95956 | 0.68 | 0.771347 |
Target: 5'- cGCGG-CCGGcGggCCGGaGUCGacGCCCg -3' miRNA: 3'- aCGUCgGGCCaCaaGGUC-CAGU--UGGG- -5' |
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31007 | 3' | -57 | NC_006560.1 | + | 146613 | 0.68 | 0.771347 |
Target: 5'- uUGCgGGCCUGGg--UCUGGGUCugcgucugAGCCCg -3' miRNA: 3'- -ACG-UCGGGCCacaAGGUCCAG--------UUGGG- -5' |
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31007 | 3' | -57 | NC_006560.1 | + | 81725 | 0.68 | 0.771347 |
Target: 5'- gGCgAGCCCGGUGgcCUcGGUgGACUg -3' miRNA: 3'- aCG-UCGGGCCACaaGGuCCAgUUGGg -5' |
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31007 | 3' | -57 | NC_006560.1 | + | 112861 | 0.68 | 0.771347 |
Target: 5'- gGCccgAGCUCGGcgg-CCAGGcgCAGCCCg -3' miRNA: 3'- aCG---UCGGGCCacaaGGUCCa-GUUGGG- -5' |
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31007 | 3' | -57 | NC_006560.1 | + | 27384 | 0.68 | 0.780618 |
Target: 5'- cGCGGCgCGGgGggCCGGGcCcuCCCg -3' miRNA: 3'- aCGUCGgGCCaCaaGGUCCaGuuGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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