miRNA display CGI


Results 61 - 80 of 191 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31007 5' -60.6 NC_006560.1 + 17463 0.67 0.707531
Target:  5'- gCUcCAgCACCUcCGGGGugagUCCgCCGGGGg -3'
miRNA:   3'- -GAuGUgGUGGGaGCUCC----AGG-GGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 17879 0.67 0.707531
Target:  5'- -cGCGCCAgCCagCGGGcG-CCCCGGcGGa -3'
miRNA:   3'- gaUGUGGUgGGa-GCUC-CaGGGGCC-CC- -5'
31007 5' -60.6 NC_006560.1 + 42888 0.67 0.707531
Target:  5'- cCUcCGCCAgCCgccCGAGcaUCCCGGGGa -3'
miRNA:   3'- -GAuGUGGUgGGa--GCUCcaGGGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 69674 0.67 0.707531
Target:  5'- --cCGCCACCC-CGGGGUcggcgcugcugcCCgCCGGGc -3'
miRNA:   3'- gauGUGGUGGGaGCUCCA------------GG-GGCCCc -5'
31007 5' -60.6 NC_006560.1 + 91152 0.67 0.707531
Target:  5'- -aGCGCCGCCCgcagccccaUCGGcGUCUUCGGGa -3'
miRNA:   3'- gaUGUGGUGGG---------AGCUcCAGGGGCCCc -5'
31007 5' -60.6 NC_006560.1 + 11391 0.67 0.706575
Target:  5'- -gACACCGCCgacCGAGGcagcaggcgcagcUCCCCaGGGc -3'
miRNA:   3'- gaUGUGGUGGga-GCUCC-------------AGGGGcCCC- -5'
31007 5' -60.6 NC_006560.1 + 48709 0.67 0.70466
Target:  5'- uCUGCACCuguaccucuuccucGCCCggGAGGUUCUCuGGGc -3'
miRNA:   3'- -GAUGUGG--------------UGGGagCUCCAGGGGcCCC- -5'
31007 5' -60.6 NC_006560.1 + 1089 0.67 0.69794
Target:  5'- ---aGCCGCCCgCcAGGcUCCCCGGcGGc -3'
miRNA:   3'- gaugUGGUGGGaGcUCC-AGGGGCC-CC- -5'
31007 5' -60.6 NC_006560.1 + 103705 0.67 0.69794
Target:  5'- aUGCGCCugCgCUCGAucgGGUCgCCGGu- -3'
miRNA:   3'- gAUGUGGugG-GAGCU---CCAGgGGCCcc -5'
31007 5' -60.6 NC_006560.1 + 112956 0.67 0.69794
Target:  5'- aUGCGCCGCgcggagCUCGAcGGUCaCCGGGa -3'
miRNA:   3'- gAUGUGGUGg-----GAGCU-CCAGgGGCCCc -5'
31007 5' -60.6 NC_006560.1 + 114227 0.67 0.688297
Target:  5'- -gGCugCGCCC---AGGUgCCCCGGGc -3'
miRNA:   3'- gaUGugGUGGGagcUCCA-GGGGCCCc -5'
31007 5' -60.6 NC_006560.1 + 27698 0.67 0.688297
Target:  5'- gUGCGCCGCCCgcgguccCGAGcGcggCCCCGGu- -3'
miRNA:   3'- gAUGUGGUGGGa------GCUC-Ca--GGGGCCcc -5'
31007 5' -60.6 NC_006560.1 + 86489 0.67 0.688297
Target:  5'- -aGCACgGCcuCCUCGGGcGUgCUCUGGGGg -3'
miRNA:   3'- gaUGUGgUG--GGAGCUC-CA-GGGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 101285 0.67 0.688297
Target:  5'- -aGCGCCGCCUggCG-GGcCCCCGaGGa -3'
miRNA:   3'- gaUGUGGUGGGa-GCuCCaGGGGC-CCc -5'
31007 5' -60.6 NC_006560.1 + 144818 0.67 0.688297
Target:  5'- -cGCGCCcCCC-CGcGGccUCCCCGGGc -3'
miRNA:   3'- gaUGUGGuGGGaGCuCC--AGGGGCCCc -5'
31007 5' -60.6 NC_006560.1 + 28547 0.67 0.688297
Target:  5'- -cGCGCCGCCCcUGGGGgccgCCCCGc-- -3'
miRNA:   3'- gaUGUGGUGGGaGCUCCa---GGGGCccc -5'
31007 5' -60.6 NC_006560.1 + 100553 0.67 0.678613
Target:  5'- gCUGCGCgCacgcgaucagGCCCgCGAagaagGGcCCCCGGGGg -3'
miRNA:   3'- -GAUGUG-G----------UGGGaGCU-----CCaGGGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 90412 0.67 0.678613
Target:  5'- -gACAUCACCuucacgaugCUCGAcGGcgCCCCGGGc -3'
miRNA:   3'- gaUGUGGUGG---------GAGCU-CCa-GGGGCCCc -5'
31007 5' -60.6 NC_006560.1 + 75276 0.67 0.678613
Target:  5'- gCUGCugCACgC-CGAGGgcucgaCCGGGGa -3'
miRNA:   3'- -GAUGugGUGgGaGCUCCagg---GGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 25381 0.67 0.678613
Target:  5'- --cCGCCGCCCUgGAGcuggCCCCGGc- -3'
miRNA:   3'- gauGUGGUGGGAgCUCca--GGGGCCcc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.