miRNA display CGI


Results 41 - 60 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31007 5' -60.6 NC_006560.1 + 15604 0.66 0.735924
Target:  5'- -gGgGCCACa--CGGGGUCCagCGGGGg -3'
miRNA:   3'- gaUgUGGUGggaGCUCCAGGg-GCCCC- -5'
31007 5' -60.6 NC_006560.1 + 74855 0.66 0.735924
Target:  5'- -cGgACCAcgcCCCUCGA-GUCgCCCGGGc -3'
miRNA:   3'- gaUgUGGU---GGGAGCUcCAG-GGGCCCc -5'
31007 5' -60.6 NC_006560.1 + 128077 0.66 0.735924
Target:  5'- aUGCGCCugCUgcgCGcGuGUCCCCGGa- -3'
miRNA:   3'- gAUGUGGugGGa--GCuC-CAGGGGCCcc -5'
31007 5' -60.6 NC_006560.1 + 70695 0.66 0.734989
Target:  5'- -cACGCCGCCCgCGccgccacGGGcCCCCGGc- -3'
miRNA:   3'- gaUGUGGUGGGaGC-------UCCaGGGGCCcc -5'
31007 5' -60.6 NC_006560.1 + 14895 0.66 0.726532
Target:  5'- ----cCCggGCCCgggUCGGGGcCCCUGGGGa -3'
miRNA:   3'- gauguGG--UGGG---AGCUCCaGGGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 21708 0.66 0.726532
Target:  5'- ---gGCCGCCCcCGcg--CCCCGGGGc -3'
miRNA:   3'- gaugUGGUGGGaGCuccaGGGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 124588 0.66 0.726532
Target:  5'- -gACGaCGgCCUCGAcgcucaaguGGgggCCCCGGGGg -3'
miRNA:   3'- gaUGUgGUgGGAGCU---------CCa--GGGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 142352 0.66 0.726532
Target:  5'- --cCGCgCGCgCCUCGGGGg--CCGGGGg -3'
miRNA:   3'- gauGUG-GUG-GGAGCUCCaggGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 46179 0.66 0.725588
Target:  5'- -cGCGCCACUCUCccucGGcUCCCCgcgucgcgccguuGGGGg -3'
miRNA:   3'- gaUGUGGUGGGAGcu--CC-AGGGG-------------CCCC- -5'
31007 5' -60.6 NC_006560.1 + 36782 0.66 0.725588
Target:  5'- -gACGCCGCCUUCGu-GUCUauugacaUCGGGGa -3'
miRNA:   3'- gaUGUGGUGGGAGCucCAGG-------GGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 131647 0.66 0.718015
Target:  5'- -cGCGCCGCgCUgGAGGgcgucgccggcgaggCCCUGGcGGg -3'
miRNA:   3'- gaUGUGGUGgGAgCUCCa--------------GGGGCC-CC- -5'
31007 5' -60.6 NC_006560.1 + 107446 0.66 0.717065
Target:  5'- -gACACCcugcCCCUCGcgaccGUCggCCCGGGGg -3'
miRNA:   3'- gaUGUGGu---GGGAGCuc---CAG--GGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 142743 0.66 0.717065
Target:  5'- -gGCGgaGCCCggCGcccGGG-CCCCGGGGg -3'
miRNA:   3'- gaUGUggUGGGa-GC---UCCaGGGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 31255 0.66 0.717065
Target:  5'- cCUcCGCCGCCUcccgcgUCGucGGcUCCUCGGGGc -3'
miRNA:   3'- -GAuGUGGUGGG------AGCu-CC-AGGGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 67864 0.66 0.717065
Target:  5'- -cGCGCCGCCCccaGAGGaCgUCCGGGu -3'
miRNA:   3'- gaUGUGGUGGGag-CUCCaG-GGGCCCc -5'
31007 5' -60.6 NC_006560.1 + 42103 0.66 0.717065
Target:  5'- aUACGCCGCCUccucgUCGAcGcCCCCGGa- -3'
miRNA:   3'- gAUGUGGUGGG-----AGCUcCaGGGGCCcc -5'
31007 5' -60.6 NC_006560.1 + 63280 0.66 0.716114
Target:  5'- cCUGCauGCCgauGCCCaUCGAGcgcaggcggucguGUCCCCGGcGGc -3'
miRNA:   3'- -GAUG--UGG---UGGG-AGCUC-------------CAGGGGCC-CC- -5'
31007 5' -60.6 NC_006560.1 + 119319 0.66 0.714211
Target:  5'- -aAUGCCGCCCgCaGGGUCUgcgagcgguaccugCCGGGGg -3'
miRNA:   3'- gaUGUGGUGGGaGcUCCAGG--------------GGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 69674 0.67 0.707531
Target:  5'- --cCGCCACCC-CGGGGUcggcgcugcugcCCgCCGGGc -3'
miRNA:   3'- gauGUGGUGGGaGCUCCA------------GG-GGCCCc -5'
31007 5' -60.6 NC_006560.1 + 42888 0.67 0.707531
Target:  5'- cCUcCGCCAgCCgccCGAGcaUCCCGGGGa -3'
miRNA:   3'- -GAuGUGGUgGGa--GCUCcaGGGGCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.