miRNA display CGI


Results 21 - 40 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31007 5' -60.6 NC_006560.1 + 28943 0.66 0.754454
Target:  5'- -aACAUggCGCCCgUCGGGGccgCCCCaacGGGGc -3'
miRNA:   3'- gaUGUG--GUGGG-AGCUCCa--GGGG---CCCC- -5'
31007 5' -60.6 NC_006560.1 + 40922 0.66 0.754454
Target:  5'- -gGCACaGCgCggCGGGGUCCCgCGGGu -3'
miRNA:   3'- gaUGUGgUGgGa-GCUCCAGGG-GCCCc -5'
31007 5' -60.6 NC_006560.1 + 88178 0.66 0.754454
Target:  5'- -cGCgGCCAUCCgcucgcaGAGGUCgCgGGGGg -3'
miRNA:   3'- gaUG-UGGUGGGag-----CUCCAGgGgCCCC- -5'
31007 5' -60.6 NC_006560.1 + 31112 0.66 0.754454
Target:  5'- -aGCGcCCGgCCUCG-GG-CgCCGGGGg -3'
miRNA:   3'- gaUGU-GGUgGGAGCuCCaGgGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 124329 0.66 0.754454
Target:  5'- -aGCGCCACCUcCGcGGGUUgCUGcGGGg -3'
miRNA:   3'- gaUGUGGUGGGaGC-UCCAGgGGC-CCC- -5'
31007 5' -60.6 NC_006560.1 + 55807 0.66 0.753536
Target:  5'- --uCGCCGCCCUCGAaccagcggaaggcGGcgccgUCgCCCGGGu -3'
miRNA:   3'- gauGUGGUGGGAGCU-------------CC-----AG-GGGCCCc -5'
31007 5' -60.6 NC_006560.1 + 74605 0.66 0.745234
Target:  5'- ---gGCCACCCUCcGGGcggaccUCCCgGGcGGg -3'
miRNA:   3'- gaugUGGUGGGAGcUCC------AGGGgCC-CC- -5'
31007 5' -60.6 NC_006560.1 + 46988 0.66 0.745234
Target:  5'- -cGCGCgucuCCUUCGAGGagCCCGcGGGc -3'
miRNA:   3'- gaUGUGgu--GGGAGCUCCagGGGC-CCC- -5'
31007 5' -60.6 NC_006560.1 + 27936 0.66 0.745234
Target:  5'- -gGCGCCucgcGCCCcCGcg--CCCCGGGGg -3'
miRNA:   3'- gaUGUGG----UGGGaGCuccaGGGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 144972 0.66 0.745234
Target:  5'- -gGCcCCGCCCcccCGAcGGaCCCCGGGc -3'
miRNA:   3'- gaUGuGGUGGGa--GCU-CCaGGGGCCCc -5'
31007 5' -60.6 NC_006560.1 + 122692 0.66 0.745234
Target:  5'- gUACAUCcuguCCCUCGuggGGGUCCaCCGGc- -3'
miRNA:   3'- gAUGUGGu---GGGAGC---UCCAGG-GGCCcc -5'
31007 5' -60.6 NC_006560.1 + 52669 0.66 0.744307
Target:  5'- gCUGCugCGCCC-CGcccuGGUCCCCaagcuccuggcgcGGGc -3'
miRNA:   3'- -GAUGugGUGGGaGCu---CCAGGGG-------------CCCc -5'
31007 5' -60.6 NC_006560.1 + 105597 0.66 0.742451
Target:  5'- -gGCGCCGCCC-CGGaggccgccccccGGcccccggccgccccUCCCCGGGa -3'
miRNA:   3'- gaUGUGGUGGGaGCU------------CC--------------AGGGGCCCc -5'
31007 5' -60.6 NC_006560.1 + 74855 0.66 0.735924
Target:  5'- -cGgACCAcgcCCCUCGA-GUCgCCCGGGc -3'
miRNA:   3'- gaUgUGGU---GGGAGCUcCAG-GGGCCCc -5'
31007 5' -60.6 NC_006560.1 + 15604 0.66 0.735924
Target:  5'- -gGgGCCACa--CGGGGUCCagCGGGGg -3'
miRNA:   3'- gaUgUGGUGggaGCUCCAGGg-GCCCC- -5'
31007 5' -60.6 NC_006560.1 + 11580 0.66 0.735924
Target:  5'- cCUcCGCCGC-CUCGGGGgUCgCGGGGu -3'
miRNA:   3'- -GAuGUGGUGgGAGCUCCaGGgGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 132564 0.66 0.735924
Target:  5'- -aGCGCgGCCgUCuGGGUCUUgGGGGc -3'
miRNA:   3'- gaUGUGgUGGgAGcUCCAGGGgCCCC- -5'
31007 5' -60.6 NC_006560.1 + 119452 0.66 0.735924
Target:  5'- cCUACcUgACCCUCGGGGaCCCCGc-- -3'
miRNA:   3'- -GAUGuGgUGGGAGCUCCaGGGGCccc -5'
31007 5' -60.6 NC_006560.1 + 82598 0.66 0.735924
Target:  5'- -cGCGgcUCGCCC-CGAGG-CCCCGGa- -3'
miRNA:   3'- gaUGU--GGUGGGaGCUCCaGGGGCCcc -5'
31007 5' -60.6 NC_006560.1 + 67891 0.66 0.735924
Target:  5'- -gGCGCCGCgaCC-CGAGGagaCCCGGGu -3'
miRNA:   3'- gaUGUGGUG--GGaGCUCCag-GGGCCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.