miRNA display CGI


Results 21 - 40 of 191 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31007 5' -60.6 NC_006560.1 + 68533 0.72 0.392049
Target:  5'- uCUGgACCcgcGCgCCUCGAGccccgCCCCGGGGg -3'
miRNA:   3'- -GAUgUGG---UG-GGAGCUCca---GGGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 10474 0.72 0.392049
Target:  5'- -cACGCCG-CCUCGGGG--CCCGGGGc -3'
miRNA:   3'- gaUGUGGUgGGAGCUCCagGGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 68079 0.72 0.40015
Target:  5'- --cCGCCAgaccggcgucCCCgacCGAGG-CCCCGGGGg -3'
miRNA:   3'- gauGUGGU----------GGGa--GCUCCaGGGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 95747 0.72 0.40015
Target:  5'- gCUGCGCCGCCC-CGAcuacGGUcgcccgacCCCCGaGGGu -3'
miRNA:   3'- -GAUGUGGUGGGaGCU----CCA--------GGGGC-CCC- -5'
31007 5' -60.6 NC_006560.1 + 140373 0.72 0.40015
Target:  5'- -gGCGCgGCCCgaggucCGGucGUCCCCGGGGg -3'
miRNA:   3'- gaUGUGgUGGGa-----GCUc-CAGGGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 26165 0.72 0.408357
Target:  5'- -gGCcCCGCCCcCGGGGagCCUGGGGu -3'
miRNA:   3'- gaUGuGGUGGGaGCUCCagGGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 142715 0.72 0.408357
Target:  5'- --cCGCgGCCC-CGAGG-CgCCCGGGGg -3'
miRNA:   3'- gauGUGgUGGGaGCUCCaG-GGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 99712 0.72 0.425083
Target:  5'- -cACGCCGCCCgggUGGGGgggcgcguacgCCgCCGGGGc -3'
miRNA:   3'- gaUGUGGUGGGa--GCUCCa----------GG-GGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 73559 0.71 0.433598
Target:  5'- gCUGCugCagcgcgugcagGCCCUCGcgGGGUUcgCCCGGGGc -3'
miRNA:   3'- -GAUGugG-----------UGGGAGC--UCCAG--GGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 35638 0.71 0.44221
Target:  5'- -cGC-CCGgCCUCGGGGugcgcggagguUCCCCGGGa -3'
miRNA:   3'- gaUGuGGUgGGAGCUCC-----------AGGGGCCCc -5'
31007 5' -60.6 NC_006560.1 + 129316 0.71 0.448297
Target:  5'- aCUACGCCGCCggCGucGUCCCgaccgugggcccggCGGGGg -3'
miRNA:   3'- -GAUGUGGUGGgaGCucCAGGG--------------GCCCC- -5'
31007 5' -60.6 NC_006560.1 + 48952 0.71 0.450919
Target:  5'- -aGCGCgGCCaC-CGAGGagCCCGGGGc -3'
miRNA:   3'- gaUGUGgUGG-GaGCUCCagGGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 145900 0.71 0.468613
Target:  5'- cCUACGggUCGCCCUCGgcggGGGUCCa-GGGGu -3'
miRNA:   3'- -GAUGU--GGUGGGAGC----UCCAGGggCCCC- -5'
31007 5' -60.6 NC_006560.1 + 146052 0.71 0.468613
Target:  5'- -gACACgCACCCg-GGGGcggCCUCGGGGa -3'
miRNA:   3'- gaUGUG-GUGGGagCUCCa--GGGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 45882 0.71 0.47489
Target:  5'- -aGguCCACCCUgagcucacCGGGGgcgaccggcgggucUCCCCGGGGg -3'
miRNA:   3'- gaUguGGUGGGA--------GCUCC--------------AGGGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 48210 0.71 0.477593
Target:  5'- uCUACaACCGCCugCUCGAGGaccugggCUUCGGGGa -3'
miRNA:   3'- -GAUG-UGGUGG--GAGCUCCa------GGGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 128270 0.71 0.477593
Target:  5'- -cGCugCGCgC-CGAGGggggggagggCCCCGGGGg -3'
miRNA:   3'- gaUGugGUGgGaGCUCCa---------GGGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 12552 0.71 0.477593
Target:  5'- -gGCGCCGCgCCgUCGGGGUCUcgucgagcagCUGGGGc -3'
miRNA:   3'- gaUGUGGUG-GG-AGCUCCAGG----------GGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 80123 0.7 0.486657
Target:  5'- -gGCGCCGCUccaaacccguggCUCGGGGcacuggUCCCGGGGc -3'
miRNA:   3'- gaUGUGGUGG------------GAGCUCCa-----GGGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 96860 0.7 0.486657
Target:  5'- uCUACgGCUACCg-CGAcgGGUCCCaCGGGGa -3'
miRNA:   3'- -GAUG-UGGUGGgaGCU--CCAGGG-GCCCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.