miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31007 5' -60.6 NC_006560.1 + 122759 1.09 0.001285
Target:  5'- aCUACACCACCCUCGAGGUCCCCGGGGc -3'
miRNA:   3'- -GAUGUGGUGGGAGCUCCAGGGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 85487 0.79 0.150273
Target:  5'- cCUGCGCCGCUugggCUCGGGGUCgCCGGGc -3'
miRNA:   3'- -GAUGUGGUGG----GAGCUCCAGgGGCCCc -5'
31007 5' -60.6 NC_006560.1 + 120077 0.79 0.1578
Target:  5'- cCUAC-CUgguGCCCgcgGAGGUCCCCGGGGa -3'
miRNA:   3'- -GAUGuGG---UGGGag-CUCCAGGGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 28800 0.78 0.182021
Target:  5'- aUGCGcCCGCCCagCGGGGagagcccggaagaUCCCCGGGGg -3'
miRNA:   3'- gAUGU-GGUGGGa-GCUCC-------------AGGGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 81696 0.77 0.215479
Target:  5'- -cGCGCCuugauCUCgUCGAGGUCCCCGaGGGc -3'
miRNA:   3'- gaUGUGGu----GGG-AGCUCCAGGGGC-CCC- -5'
31007 5' -60.6 NC_006560.1 + 106543 0.76 0.229528
Target:  5'- -cGCGCgCACCCUCGAcgcgcucuacgccgGGUUCCuCGGGGg -3'
miRNA:   3'- gaUGUG-GUGGGAGCU--------------CCAGGG-GCCCC- -5'
31007 5' -60.6 NC_006560.1 + 23090 0.76 0.236564
Target:  5'- -cGCGCCugCUUCGAGG-CCUCGGGc -3'
miRNA:   3'- gaUGUGGugGGAGCUCCaGGGGCCCc -5'
31007 5' -60.6 NC_006560.1 + 120117 0.76 0.253491
Target:  5'- gUGCugCGCCCU--GGG-CCCCGGGGc -3'
miRNA:   3'- gAUGugGUGGGAgcUCCaGGGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 34377 0.75 0.271401
Target:  5'- --cCGCCG-CCUCGGGGUCgCCgCGGGGg -3'
miRNA:   3'- gauGUGGUgGGAGCUCCAG-GG-GCCCC- -5'
31007 5' -60.6 NC_006560.1 + 132668 0.75 0.271401
Target:  5'- gUACGCCACgCaCUCGAGGUUggugCCGGGGc -3'
miRNA:   3'- gAUGUGGUG-G-GAGCUCCAGg---GGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 119396 0.75 0.277593
Target:  5'- gCUGCA-CGCCCUCGuGGucuUCCCCGGcGGc -3'
miRNA:   3'- -GAUGUgGUGGGAGCuCC---AGGGGCC-CC- -5'
31007 5' -60.6 NC_006560.1 + 99778 0.74 0.310246
Target:  5'- gUACGCCgccgggGCCCcaaaCGGGG-CCCCGGGGc -3'
miRNA:   3'- gAUGUGG------UGGGa---GCUCCaGGGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 33510 0.74 0.324102
Target:  5'- -gGCGCCgGCCCgggggUCGGGGUCaCgCCGGGGu -3'
miRNA:   3'- gaUGUGG-UGGG-----AGCUCCAG-G-GGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 44085 0.74 0.331201
Target:  5'- -cGCGCCuucuCgCUCGcGGUCCCCGGcGGg -3'
miRNA:   3'- gaUGUGGu---GgGAGCuCCAGGGGCC-CC- -5'
31007 5' -60.6 NC_006560.1 + 142519 0.74 0.331201
Target:  5'- -gGCGCC-CCCggggCGGGG-CCCCGGGc -3'
miRNA:   3'- gaUGUGGuGGGa---GCUCCaGGGGCCCc -5'
31007 5' -60.6 NC_006560.1 + 105648 0.73 0.345741
Target:  5'- -gGCGCC-CCCgUCGAccgGGaCCCCGGGGc -3'
miRNA:   3'- gaUGUGGuGGG-AGCU---CCaGGGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 83315 0.73 0.35318
Target:  5'- -cGCGCCcUCCUCGGgacccuGGUCgCCGGGGg -3'
miRNA:   3'- gaUGUGGuGGGAGCU------CCAGgGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 87977 0.73 0.360732
Target:  5'- -gACGCCGCCCUCGuacuugcGGaUCUCGGGGc -3'
miRNA:   3'- gaUGUGGUGGGAGCu------CCaGGGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 78887 0.73 0.368396
Target:  5'- --cCACCugCUgcgCGAGGcgUUCCCGGGGg -3'
miRNA:   3'- gauGUGGugGGa--GCUCC--AGGGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 98176 0.73 0.376171
Target:  5'- uCUACuCCuuCUUCGAGGgCCUCGGGGa -3'
miRNA:   3'- -GAUGuGGugGGAGCUCCaGGGGCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.