miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31007 5' -60.6 NC_006560.1 + 1089 0.67 0.69794
Target:  5'- ---aGCCGCCCgCcAGGcUCCCCGGcGGc -3'
miRNA:   3'- gaugUGGUGGGaGcUCC-AGGGGCC-CC- -5'
31007 5' -60.6 NC_006560.1 + 1128 0.68 0.600498
Target:  5'- -cGCGCCcCCCUcCGGcccGGcCUCCGGGGu -3'
miRNA:   3'- gaUGUGGuGGGA-GCU---CCaGGGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 4536 0.7 0.521803
Target:  5'- -aGCACgCGCCC-CGGGGgcgggggcucggCCCCGGGc -3'
miRNA:   3'- gaUGUG-GUGGGaGCUCCa-----------GGGGCCCc -5'
31007 5' -60.6 NC_006560.1 + 4904 0.68 0.610258
Target:  5'- -cGCGUCGCgCUCGGGGUCCggguCCGGGu -3'
miRNA:   3'- gaUGUGGUGgGAGCUCCAGG----GGCCCc -5'
31007 5' -60.6 NC_006560.1 + 5095 0.7 0.514318
Target:  5'- -cGCGCCGCCC--GGGGUCggCGGGGg -3'
miRNA:   3'- gaUGUGGUGGGagCUCCAGggGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 5135 0.66 0.758115
Target:  5'- -cACACCgacucgcggcgcgggGCCCgggcCGGGG-CCgCGGGGg -3'
miRNA:   3'- gaUGUGG---------------UGGGa---GCUCCaGGgGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 5453 0.69 0.571372
Target:  5'- cCUuCGCCGCCCg-GGGG-CgCCGGGGc -3'
miRNA:   3'- -GAuGUGGUGGGagCUCCaGgGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 6496 0.66 0.772589
Target:  5'- -cGCGCCGacggaaCCUCGcAGGUgagcggucgUCCCGGGa -3'
miRNA:   3'- gaUGUGGUg-----GGAGC-UCCA---------GGGGCCCc -5'
31007 5' -60.6 NC_006560.1 + 7485 0.69 0.591733
Target:  5'- -cACGCgACCCcCGGGGgugaggacggcccccUCCCGGGGg -3'
miRNA:   3'- gaUGUGgUGGGaGCUCCa--------------GGGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 8261 0.66 0.772589
Target:  5'- gUGCGCCccguGCCCUCccccgCCCaCGGGGg -3'
miRNA:   3'- gAUGUGG----UGGGAGcuccaGGG-GCCCC- -5'
31007 5' -60.6 NC_006560.1 + 8761 0.68 0.600498
Target:  5'- gUACGCCucgGCgCUCuGGGUCUgCGGGGu -3'
miRNA:   3'- gAUGUGG---UGgGAGcUCCAGGgGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 10280 0.66 0.763575
Target:  5'- --cCGCC-CCCUCcgcgaGAGGgggcgggCCgCCGGGGa -3'
miRNA:   3'- gauGUGGuGGGAG-----CUCCa------GG-GGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 10474 0.72 0.392049
Target:  5'- -cACGCCG-CCUCGGGG--CCCGGGGc -3'
miRNA:   3'- gaUGUGGUgGGAGCUCCagGGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 11133 0.68 0.649379
Target:  5'- ---aGCgGgCgUCGAGGgCCCCGGGGc -3'
miRNA:   3'- gaugUGgUgGgAGCUCCaGGGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 11244 0.68 0.600498
Target:  5'- -gGCGCCgcuugGCCCgaCGGGGcgaCUCCGGGGg -3'
miRNA:   3'- gaUGUGG-----UGGGa-GCUCCa--GGGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 11391 0.67 0.706575
Target:  5'- -gACACCGCCgacCGAGGcagcaggcgcagcUCCCCaGGGc -3'
miRNA:   3'- gaUGUGGUGGga-GCUCC-------------AGGGGcCCC- -5'
31007 5' -60.6 NC_006560.1 + 11580 0.66 0.735924
Target:  5'- cCUcCGCCGC-CUCGGGGgUCgCGGGGu -3'
miRNA:   3'- -GAuGUGGUGgGAGCUCCaGGgGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 12552 0.71 0.477593
Target:  5'- -gGCGCCGCgCCgUCGGGGUCUcgucgagcagCUGGGGc -3'
miRNA:   3'- gaUGUGGUG-GG-AGCUCCAGG----------GGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 13370 0.68 0.610258
Target:  5'- -aGCGCgCGCCCggcCGGGccgCCUCGGGGg -3'
miRNA:   3'- gaUGUG-GUGGGa--GCUCca-GGGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 14618 0.7 0.505023
Target:  5'- -gGCGCgGCCCUCG-GG-CCCgCGGGcGg -3'
miRNA:   3'- gaUGUGgUGGGAGCuCCaGGG-GCCC-C- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.