miRNA display CGI


Results 1 - 20 of 191 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31007 5' -60.6 NC_006560.1 + 149195 0.66 0.763575
Target:  5'- aUAgACCGCCauggcggCGAGGgggcgcggCCCGGGGc -3'
miRNA:   3'- gAUgUGGUGGga-----GCUCCag------GGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 148661 0.68 0.647424
Target:  5'- -gACGCgGCCCaaauaCGGGGcgccgugggcggCCCCGGGGc -3'
miRNA:   3'- gaUGUGgUGGGa----GCUCCa-----------GGGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 147589 0.66 0.764481
Target:  5'- gUGCgGCC-CCCgagggugacggaggcCGGGGccgccUCCCCGGGGa -3'
miRNA:   3'- gAUG-UGGuGGGa--------------GCUCC-----AGGGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 146052 0.71 0.468613
Target:  5'- -gACACgCACCCg-GGGGcggCCUCGGGGa -3'
miRNA:   3'- gaUGUG-GUGGGagCUCCa--GGGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 145900 0.71 0.468613
Target:  5'- cCUACGggUCGCCCUCGgcggGGGUCCa-GGGGu -3'
miRNA:   3'- -GAUGU--GGUGGGAGC----UCCAGGggCCCC- -5'
31007 5' -60.6 NC_006560.1 + 145536 0.66 0.772589
Target:  5'- -gAC-CCGCCCUCGg---CgCCGGGGa -3'
miRNA:   3'- gaUGuGGUGGGAGCuccaGgGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 144972 0.66 0.745234
Target:  5'- -gGCcCCGCCCcccCGAcGGaCCCCGGGc -3'
miRNA:   3'- gaUGuGGUGGGa--GCU-CCaGGGGCCCc -5'
31007 5' -60.6 NC_006560.1 + 144818 0.67 0.688297
Target:  5'- -cGCGCCcCCC-CGcGGccUCCCCGGGc -3'
miRNA:   3'- gaUGUGGuGGGaGCuCC--AGGGGCCCc -5'
31007 5' -60.6 NC_006560.1 + 143428 0.66 0.754454
Target:  5'- -cACACC-CCCguccCGcGGUacgCCCGGGGc -3'
miRNA:   3'- gaUGUGGuGGGa---GCuCCAg--GGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 142743 0.66 0.717065
Target:  5'- -gGCGgaGCCCggCGcccGGG-CCCCGGGGg -3'
miRNA:   3'- gaUGUggUGGGa-GC---UCCaGGGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 142715 0.72 0.408357
Target:  5'- --cCGCgGCCC-CGAGG-CgCCCGGGGg -3'
miRNA:   3'- gauGUGgUGGGaGCUCCaG-GGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 142519 0.74 0.331201
Target:  5'- -gGCGCC-CCCggggCGGGG-CCCCGGGc -3'
miRNA:   3'- gaUGUGGuGGGa---GCUCCaGGGGCCCc -5'
31007 5' -60.6 NC_006560.1 + 142352 0.66 0.726532
Target:  5'- --cCGCgCGCgCCUCGGGGg--CCGGGGg -3'
miRNA:   3'- gauGUG-GUG-GGAGCUCCaggGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 140373 0.72 0.40015
Target:  5'- -gGCGCgGCCCgaggucCGGucGUCCCCGGGGg -3'
miRNA:   3'- gaUGUGgUGGGa-----GCUc-CAGGGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 135575 0.66 0.763575
Target:  5'- -gGCACCGCCUggagcccgCGcGGGUgCCCCGGc- -3'
miRNA:   3'- gaUGUGGUGGGa-------GC-UCCA-GGGGCCcc -5'
31007 5' -60.6 NC_006560.1 + 134808 0.67 0.678613
Target:  5'- -gGCcCCGCCCacggUCGccAGGUCCCgGGGc -3'
miRNA:   3'- gaUGuGGUGGG----AGC--UCCAGGGgCCCc -5'
31007 5' -60.6 NC_006560.1 + 132668 0.75 0.271401
Target:  5'- gUACGCCACgCaCUCGAGGUUggugCCGGGGc -3'
miRNA:   3'- gAUGUGGUG-G-GAGCUCCAGg---GGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 132564 0.66 0.735924
Target:  5'- -aGCGCgGCCgUCuGGGUCUUgGGGGc -3'
miRNA:   3'- gaUGUGgUGGgAGcUCCAGGGgCCCC- -5'
31007 5' -60.6 NC_006560.1 + 131647 0.66 0.718015
Target:  5'- -cGCGCCGCgCUgGAGGgcgucgccggcgaggCCCUGGcGGg -3'
miRNA:   3'- gaUGUGGUGgGAgCUCCa--------------GGGGCC-CC- -5'
31007 5' -60.6 NC_006560.1 + 129316 0.71 0.448297
Target:  5'- aCUACGCCGCCggCGucGUCCCgaccgugggcccggCGGGGg -3'
miRNA:   3'- -GAUGUGGUGGgaGCucCAGGG--------------GCCCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.