miRNA display CGI


Results 21 - 40 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31007 5' -60.6 NC_006560.1 + 14895 0.66 0.726532
Target:  5'- ----cCCggGCCCgggUCGGGGcCCCUGGGGa -3'
miRNA:   3'- gauguGG--UGGG---AGCUCCaGGGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 15506 0.68 0.629815
Target:  5'- -gGCcCCGCCCcCGAG--UCCCGGGGc -3'
miRNA:   3'- gaUGuGGUGGGaGCUCcaGGGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 15604 0.66 0.735924
Target:  5'- -gGgGCCACa--CGGGGUCCagCGGGGg -3'
miRNA:   3'- gaUgUGGUGggaGCUCCAGGg-GCCCC- -5'
31007 5' -60.6 NC_006560.1 + 17463 0.67 0.707531
Target:  5'- gCUcCAgCACCUcCGGGGugagUCCgCCGGGGg -3'
miRNA:   3'- -GAuGUgGUGGGaGCUCC----AGG-GGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 17879 0.67 0.707531
Target:  5'- -cGCGCCAgCCagCGGGcG-CCCCGGcGGa -3'
miRNA:   3'- gaUGUGGUgGGa-GCUC-CaGGGGCC-CC- -5'
31007 5' -60.6 NC_006560.1 + 18021 0.66 0.763575
Target:  5'- -cGCGCCGCCCgCGAcggcuagcgcGG-CCgCCGGGa -3'
miRNA:   3'- gaUGUGGUGGGaGCU----------CCaGG-GGCCCc -5'
31007 5' -60.6 NC_006560.1 + 21708 0.66 0.726532
Target:  5'- ---gGCCGCCCcCGcg--CCCCGGGGc -3'
miRNA:   3'- gaugUGGUGGGaGCuccaGGGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 22804 0.69 0.579111
Target:  5'- gCUACGCCagcggcgaGCCCUggccCGGGGccgagcccccgcCCCCGGGGc -3'
miRNA:   3'- -GAUGUGG--------UGGGA----GCUCCa-----------GGGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 23090 0.76 0.236564
Target:  5'- -cGCGCCugCUUCGAGG-CCUCGGGc -3'
miRNA:   3'- gaUGUGGugGGAGCUCCaGGGGCCCc -5'
31007 5' -60.6 NC_006560.1 + 25381 0.67 0.678613
Target:  5'- --cCGCCGCCCUgGAGcuggCCCCGGc- -3'
miRNA:   3'- gauGUGGUGGGAgCUCca--GGGGCCcc -5'
31007 5' -60.6 NC_006560.1 + 26165 0.72 0.408357
Target:  5'- -gGCcCCGCCCcCGGGGagCCUGGGGu -3'
miRNA:   3'- gaUGuGGUGGGaGCUCCagGGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 26923 0.68 0.649379
Target:  5'- ---gGCCGCCCgcCGGGGaggCCgCGGGGc -3'
miRNA:   3'- gaugUGGUGGGa-GCUCCa--GGgGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 27698 0.67 0.688297
Target:  5'- gUGCGCCGCCCgcgguccCGAGcGcggCCCCGGu- -3'
miRNA:   3'- gAUGUGGUGGGa------GCUC-Ca--GGGGCCcc -5'
31007 5' -60.6 NC_006560.1 + 27936 0.66 0.745234
Target:  5'- -gGCGCCucgcGCCCcCGcg--CCCCGGGGg -3'
miRNA:   3'- gaUGUGG----UGGGaGCuccaGGGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 28474 0.68 0.600498
Target:  5'- aUGCGC--CCCUCGAcGGUccgCCCCGGGc -3'
miRNA:   3'- gAUGUGguGGGAGCU-CCA---GGGGCCCc -5'
31007 5' -60.6 NC_006560.1 + 28547 0.67 0.688297
Target:  5'- -cGCGCCGCCCcUGGGGgccgCCCCGc-- -3'
miRNA:   3'- gaUGUGGUGGGaGCUCCa---GGGGCccc -5'
31007 5' -60.6 NC_006560.1 + 28800 0.78 0.182021
Target:  5'- aUGCGcCCGCCCagCGGGGagagcccggaagaUCCCCGGGGg -3'
miRNA:   3'- gAUGU-GGUGGGa-GCUCC-------------AGGGGCCCC- -5'
31007 5' -60.6 NC_006560.1 + 28867 0.68 0.600498
Target:  5'- -gGgACCGCCCaUCGGGGaagCCCGGGcGg -3'
miRNA:   3'- gaUgUGGUGGG-AGCUCCag-GGGCCC-C- -5'
31007 5' -60.6 NC_006560.1 + 28943 0.66 0.754454
Target:  5'- -aACAUggCGCCCgUCGGGGccgCCCCaacGGGGc -3'
miRNA:   3'- gaUGUG--GUGGG-AGCUCCa--GGGG---CCCC- -5'
31007 5' -60.6 NC_006560.1 + 29077 0.68 0.6396
Target:  5'- -gGC-CCGCCCgUCGGGGaccgCCCCcaucgucacucGGGGg -3'
miRNA:   3'- gaUGuGGUGGG-AGCUCCa---GGGG-----------CCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.