miRNA display CGI


Results 41 - 60 of 510 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31008 3' -66 NC_006560.1 + 16535 0.66 0.421915
Target:  5'- cGC-GGCGCUgggGCGCCGCGcGCCauCGAAg -3'
miRNA:   3'- uCGuCCGCGG---CGCGGUGC-CGGc-GCUU- -5'
31008 3' -66 NC_006560.1 + 111418 0.66 0.421915
Target:  5'- cAGCuucuuucuGGCGaaggCGgGCCACcGCCGCGAGg -3'
miRNA:   3'- -UCGu-------CCGCg---GCgCGGUGcCGGCGCUU- -5'
31008 3' -66 NC_006560.1 + 34610 0.66 0.421915
Target:  5'- cGGgGGGUgGCCGCGCgGCucggGGgCGCGGAg -3'
miRNA:   3'- -UCgUCCG-CGGCGCGgUG----CCgGCGCUU- -5'
31008 3' -66 NC_006560.1 + 26365 0.66 0.421915
Target:  5'- cGGCgGGGCGgagaCgGCGCCcCGGCCGgGGc -3'
miRNA:   3'- -UCG-UCCGC----GgCGCGGuGCCGGCgCUu -5'
31008 3' -66 NC_006560.1 + 34724 0.66 0.421915
Target:  5'- gGGcCGGGgGUCGCucGCCGCGGCgGCc-- -3'
miRNA:   3'- -UC-GUCCgCGGCG--CGGUGCCGgCGcuu -5'
31008 3' -66 NC_006560.1 + 39956 0.66 0.421915
Target:  5'- aGGCgGGGCgGCgGCGCgGgCGGCUGCGu- -3'
miRNA:   3'- -UCG-UCCG-CGgCGCGgU-GCCGGCGCuu -5'
31008 3' -66 NC_006560.1 + 64843 0.66 0.421915
Target:  5'- gAGCAGGCugggGUCGCGCgCGcCGGCgCGCc-- -3'
miRNA:   3'- -UCGUCCG----CGGCGCG-GU-GCCG-GCGcuu -5'
31008 3' -66 NC_006560.1 + 67984 0.66 0.421915
Target:  5'- cGCGGGgGCCGCGgCGCcGUCggGCGAc -3'
miRNA:   3'- uCGUCCgCGGCGCgGUGcCGG--CGCUu -5'
31008 3' -66 NC_006560.1 + 81480 0.66 0.421915
Target:  5'- gGGgGGaGCGCCgGCcCCGCGGCCuCGAc -3'
miRNA:   3'- -UCgUC-CGCGG-CGcGGUGCCGGcGCUu -5'
31008 3' -66 NC_006560.1 + 134547 0.66 0.421915
Target:  5'- cGCGGGCGUgcuCGCggaGCgCGCGGCaUGCGAc -3'
miRNA:   3'- uCGUCCGCG---GCG---CG-GUGCCG-GCGCUu -5'
31008 3' -66 NC_006560.1 + 131897 0.66 0.421915
Target:  5'- cGCggaGGGCGCCgGCGCggagaaggCGCGGCuugcCGCGGAg -3'
miRNA:   3'- uCG---UCCGCGG-CGCG--------GUGCCG----GCGCUU- -5'
31008 3' -66 NC_006560.1 + 58690 0.66 0.42024
Target:  5'- uGCucGGCGCgGCGCCcuccucccucGCCGCGAAg -3'
miRNA:   3'- uCGu-CCGCGgCGCGGugc-------CGGCGCUU- -5'
31008 3' -66 NC_006560.1 + 111984 0.66 0.419405
Target:  5'- cGCGGgggaccugguccccGCGCCGgGCCAgcCGGacCCGCGGAu -3'
miRNA:   3'- uCGUC--------------CGCGGCgCGGU--GCC--GGCGCUU- -5'
31008 3' -66 NC_006560.1 + 121058 0.66 0.419405
Target:  5'- gGGCAccaggaagacGGUGgCGCGCugucggaagugacgCACGGCCGCGu- -3'
miRNA:   3'- -UCGU----------CCGCgGCGCG--------------GUGCCGGCGCuu -5'
31008 3' -66 NC_006560.1 + 147971 0.66 0.416904
Target:  5'- gAGCucGGCGuCCGUGUCggcgucggaggcgggGCGGUCGCGGc -3'
miRNA:   3'- -UCGu-CCGC-GGCGCGG---------------UGCCGGCGCUu -5'
31008 3' -66 NC_006560.1 + 116531 0.66 0.413584
Target:  5'- aGGCGGGCGgCGaugGCgACGGCCGa--- -3'
miRNA:   3'- -UCGUCCGCgGCg--CGgUGCCGGCgcuu -5'
31008 3' -66 NC_006560.1 + 74904 0.66 0.413584
Target:  5'- cGGCGGcGCgGCCGuCGCgACGGCCaGCc-- -3'
miRNA:   3'- -UCGUC-CG-CGGC-GCGgUGCCGG-CGcuu -5'
31008 3' -66 NC_006560.1 + 67446 0.66 0.413584
Target:  5'- cGguGGCGCCGgucccCGUCGCGGUccuCGCGu- -3'
miRNA:   3'- uCguCCGCGGC-----GCGGUGCCG---GCGCuu -5'
31008 3' -66 NC_006560.1 + 54847 0.66 0.413584
Target:  5'- gAGCAGccaCGCCGcCGCCGgGaggcgcccgggaGCCGCGAGa -3'
miRNA:   3'- -UCGUCc--GCGGC-GCGGUgC------------CGGCGCUU- -5'
31008 3' -66 NC_006560.1 + 33364 0.66 0.413584
Target:  5'- cGUcucGCGcCCGCGgCGgGGCCGCGGAg -3'
miRNA:   3'- uCGuc-CGC-GGCGCgGUgCCGGCGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.