miRNA display CGI


Results 21 - 40 of 510 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31008 3' -66 NC_006560.1 + 21652 0.66 0.438875
Target:  5'- cGaCGGGCG--GCGCCGcCGGCCGCa-- -3'
miRNA:   3'- uC-GUCCGCggCGCGGU-GCCGGCGcuu -5'
31008 3' -66 NC_006560.1 + 26652 0.66 0.438875
Target:  5'- gGGaCGGG-GCCGCGggggggaCGgGGCCGCGGGg -3'
miRNA:   3'- -UC-GUCCgCGGCGCg------GUgCCGGCGCUU- -5'
31008 3' -66 NC_006560.1 + 70557 0.66 0.438875
Target:  5'- cGCgAGGUGCaCGCGUucguCACGGUCGcCGGGg -3'
miRNA:   3'- uCG-UCCGCG-GCGCG----GUGCCGGC-GCUU- -5'
31008 3' -66 NC_006560.1 + 96228 0.66 0.438875
Target:  5'- cGGUcgAGGCcgGCCGCGCgACG-CUGCGGGa -3'
miRNA:   3'- -UCG--UCCG--CGGCGCGgUGCcGGCGCUU- -5'
31008 3' -66 NC_006560.1 + 97372 0.66 0.438875
Target:  5'- gAGCAGaCGCgGCGgC-CGGCCGgGGg -3'
miRNA:   3'- -UCGUCcGCGgCGCgGuGCCGGCgCUu -5'
31008 3' -66 NC_006560.1 + 146886 0.66 0.438875
Target:  5'- gGGCcaGGGC-CUGgGCCAgGGCCGCc-- -3'
miRNA:   3'- -UCG--UCCGcGGCgCGGUgCCGGCGcuu -5'
31008 3' -66 NC_006560.1 + 29420 0.66 0.438875
Target:  5'- uGgGGGUcuacgGCCGCGCuCGCGGCCccGCGc- -3'
miRNA:   3'- uCgUCCG-----CGGCGCG-GUGCCGG--CGCuu -5'
31008 3' -66 NC_006560.1 + 55396 0.66 0.438875
Target:  5'- cGGCAGGUGUacucgcugugcuCGCGCgacaGCGGCaggGCGGAg -3'
miRNA:   3'- -UCGUCCGCG------------GCGCGg---UGCCGg--CGCUU- -5'
31008 3' -66 NC_006560.1 + 65962 0.66 0.438018
Target:  5'- aGGCGGGCGgCGCGgUGCGGCgccucgaccugccCGgGAGa -3'
miRNA:   3'- -UCGUCCGCgGCGCgGUGCCG-------------GCgCUU- -5'
31008 3' -66 NC_006560.1 + 149177 0.66 0.435452
Target:  5'- cGCGGGgaGCCcaucagcauagacCGCCAUGGCgGCGAGg -3'
miRNA:   3'- uCGUCCg-CGGc------------GCGGUGCCGgCGCUU- -5'
31008 3' -66 NC_006560.1 + 23776 0.66 0.430346
Target:  5'- cGCcGGCGCCgccGCGCCGCugcuGGcCCGCa-- -3'
miRNA:   3'- uCGuCCGCGG---CGCGGUG----CC-GGCGcuu -5'
31008 3' -66 NC_006560.1 + 131643 0.66 0.430346
Target:  5'- cGCccGCGCCGCGCUggaggGCGucGCCgGCGAGg -3'
miRNA:   3'- uCGucCGCGGCGCGG-----UGC--CGG-CGCUU- -5'
31008 3' -66 NC_006560.1 + 146546 0.66 0.430346
Target:  5'- cGCGGGCagcgagGCC-CGCUugGGuccCCGCGAGc -3'
miRNA:   3'- uCGUCCG------CGGcGCGGugCC---GGCGCUU- -5'
31008 3' -66 NC_006560.1 + 4437 0.66 0.430346
Target:  5'- -aCGGGCGCgggCGCGCCGgCGGCCuCGu- -3'
miRNA:   3'- ucGUCCGCG---GCGCGGU-GCCGGcGCuu -5'
31008 3' -66 NC_006560.1 + 28552 0.66 0.430346
Target:  5'- cGCcccuGGGgGCCGCcCCGCG-CCGCGGc -3'
miRNA:   3'- uCG----UCCgCGGCGcGGUGCcGGCGCUu -5'
31008 3' -66 NC_006560.1 + 88909 0.66 0.430346
Target:  5'- cGCcGGCcgGCCGUGCCugucgcucccggGCGcGCUGCGAGg -3'
miRNA:   3'- uCGuCCG--CGGCGCGG------------UGC-CGGCGCUU- -5'
31008 3' -66 NC_006560.1 + 2421 0.66 0.425275
Target:  5'- -cCAGGCGCgUGCGCaCGCGguagcgcacguugccGCCGCGGc -3'
miRNA:   3'- ucGUCCGCG-GCGCG-GUGC---------------CGGCGCUu -5'
31008 3' -66 NC_006560.1 + 70805 0.66 0.425275
Target:  5'- cGGCAGcaCGCCcgaccagcGCGCCGCGGCgguccgggagguccuCGCGGAc -3'
miRNA:   3'- -UCGUCc-GCGG--------CGCGGUGCCG---------------GCGCUU- -5'
31008 3' -66 NC_006560.1 + 134547 0.66 0.421915
Target:  5'- cGCGGGCGUgcuCGCggaGCgCGCGGCaUGCGAc -3'
miRNA:   3'- uCGUCCGCG---GCG---CG-GUGCCG-GCGCUu -5'
31008 3' -66 NC_006560.1 + 81480 0.66 0.421915
Target:  5'- gGGgGGaGCGCCgGCcCCGCGGCCuCGAc -3'
miRNA:   3'- -UCgUC-CGCGG-CGcGGUGCCGGcGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.