miRNA display CGI


Results 21 - 40 of 510 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31008 3' -66 NC_006560.1 + 3554 0.7 0.235308
Target:  5'- cGGCGgcGGCGCCGacggagcgcaccUGCCGCGGgCUGCGGg -3'
miRNA:   3'- -UCGU--CCGCGGC------------GCGGUGCC-GGCGCUu -5'
31008 3' -66 NC_006560.1 + 3608 0.66 0.412756
Target:  5'- cGGC-GGCGCCgGCGacgaggcCCACGGCgCGCa-- -3'
miRNA:   3'- -UCGuCCGCGG-CGC-------GGUGCCG-GCGcuu -5'
31008 3' -66 NC_006560.1 + 3688 0.69 0.269797
Target:  5'- cGCAGGCGCaugaGCGUCAgCGcGUCGCGc- -3'
miRNA:   3'- uCGUCCGCGg---CGCGGU-GC-CGGCGCuu -5'
31008 3' -66 NC_006560.1 + 3764 0.78 0.063884
Target:  5'- cGGC-GGCGCCGCGCgGCGGgaCCGCGGc -3'
miRNA:   3'- -UCGuCCGCGGCGCGgUGCC--GGCGCUu -5'
31008 3' -66 NC_006560.1 + 3933 0.78 0.068975
Target:  5'- cGCGGGgGCgGCGCCGCGGUCgGCGGc -3'
miRNA:   3'- uCGUCCgCGgCGCGGUGCCGG-CGCUu -5'
31008 3' -66 NC_006560.1 + 3973 0.68 0.301557
Target:  5'- aGGC-GGCGCUGCGCggcgaCACGcCCGCGGc -3'
miRNA:   3'- -UCGuCCGCGGCGCG-----GUGCcGGCGCUu -5'
31008 3' -66 NC_006560.1 + 4049 0.77 0.078338
Target:  5'- cGGCGcGGCGCCG-GCCGCGGCgGCGu- -3'
miRNA:   3'- -UCGU-CCGCGGCgCGGUGCCGgCGCuu -5'
31008 3' -66 NC_006560.1 + 4096 0.72 0.169097
Target:  5'- cGUAGGCGCgGCGCagGCuGGCgGCGAGg -3'
miRNA:   3'- uCGUCCGCGgCGCGg-UG-CCGgCGCUU- -5'
31008 3' -66 NC_006560.1 + 4296 0.66 0.4475
Target:  5'- aAGCAGGCGCgGUccagcuccacGUCGcCGGCCGUc-- -3'
miRNA:   3'- -UCGUCCGCGgCG----------CGGU-GCCGGCGcuu -5'
31008 3' -66 NC_006560.1 + 4437 0.66 0.430346
Target:  5'- -aCGGGCGCgggCGCGCCGgCGGCCuCGu- -3'
miRNA:   3'- ucGUCCGCG---GCGCGGU-GCCGGcGCuu -5'
31008 3' -66 NC_006560.1 + 4639 0.74 0.120063
Target:  5'- -cCAGGgGCaCGgGCCGCGGCCGCGc- -3'
miRNA:   3'- ucGUCCgCG-GCgCGGUGCCGGCGCuu -5'
31008 3' -66 NC_006560.1 + 4674 0.73 0.149806
Target:  5'- cGGCccguGGCGUCGCGCC-CGGCCacgGCGGc -3'
miRNA:   3'- -UCGu---CCGCGGCGCGGuGCCGG---CGCUu -5'
31008 3' -66 NC_006560.1 + 4713 0.72 0.169097
Target:  5'- cGGCGGcGCucGCUGCGCC-CGGCgGCGAc -3'
miRNA:   3'- -UCGUC-CG--CGGCGCGGuGCCGgCGCUu -5'
31008 3' -66 NC_006560.1 + 4750 0.66 0.413584
Target:  5'- cGGC-GGCgGCC-CGCgGCGGCgGCGGc -3'
miRNA:   3'- -UCGuCCG-CGGcGCGgUGCCGgCGCUu -5'
31008 3' -66 NC_006560.1 + 4894 0.71 0.209462
Target:  5'- cGGCGGGgGCCGCGUCGCGcUCGgGGu -3'
miRNA:   3'- -UCGUCCgCGGCGCGGUGCcGGCgCUu -5'
31008 3' -66 NC_006560.1 + 5090 0.69 0.294982
Target:  5'- uGCGGcGCGCCGC-CCGgGGUCgGCGGGg -3'
miRNA:   3'- uCGUC-CGCGGCGcGGUgCCGG-CGCUU- -5'
31008 3' -66 NC_006560.1 + 5147 0.73 0.139213
Target:  5'- cGGCgcgGGGC-CCGgGCCGgGGCCGCGGGg -3'
miRNA:   3'- -UCG---UCCGcGGCgCGGUgCCGGCGCUU- -5'
31008 3' -66 NC_006560.1 + 5175 0.7 0.257868
Target:  5'- gGGCGGGcCGCgGCGaCgGCGGCCcCGAc -3'
miRNA:   3'- -UCGUCC-GCGgCGC-GgUGCCGGcGCUu -5'
31008 3' -66 NC_006560.1 + 5245 0.71 0.195157
Target:  5'- cAGCAGGgccagcUGCCGCGaggaCGCGGCgGCGGc -3'
miRNA:   3'- -UCGUCC------GCGGCGCg---GUGCCGgCGCUu -5'
31008 3' -66 NC_006560.1 + 5464 0.67 0.350738
Target:  5'- cGgGGGCGCCgGgGCUccgagcGCGGUCGCGGc -3'
miRNA:   3'- uCgUCCGCGG-CgCGG------UGCCGGCGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.