miRNA display CGI


Results 21 - 40 of 510 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31008 3' -66 NC_006560.1 + 6102 0.76 0.084528
Target:  5'- --aGGGCGCCGCGCCGCcGCCGCc-- -3'
miRNA:   3'- ucgUCCGCGGCGCGGUGcCGGCGcuu -5'
31008 3' -66 NC_006560.1 + 84409 0.76 0.086693
Target:  5'- cGGCAGGgGCgCG-GCCAgGGCCGCGGg -3'
miRNA:   3'- -UCGUCCgCG-GCgCGGUgCCGGCGCUu -5'
31008 3' -66 NC_006560.1 + 84703 0.76 0.086693
Target:  5'- gGGCgacGGGCGCCucgGCGCCACcaGCCGCGAGg -3'
miRNA:   3'- -UCG---UCCGCGG---CGCGGUGc-CGGCGCUU- -5'
31008 3' -66 NC_006560.1 + 101814 0.76 0.08891
Target:  5'- gAGCA-GCGCCGCGaCCACGGCguggccCGCGAGc -3'
miRNA:   3'- -UCGUcCGCGGCGC-GGUGCCG------GCGCUU- -5'
31008 3' -66 NC_006560.1 + 102585 0.76 0.091182
Target:  5'- cGCccGGCGCCGCGCCucgagaACGGCCGCc-- -3'
miRNA:   3'- uCGu-CCGCGGCGCGG------UGCCGGCGcuu -5'
31008 3' -66 NC_006560.1 + 130527 0.76 0.091182
Target:  5'- cGguGGCGCCGCGCgGCG-CCGCGc- -3'
miRNA:   3'- uCguCCGCGGCGCGgUGCcGGCGCuu -5'
31008 3' -66 NC_006560.1 + 19915 0.76 0.095891
Target:  5'- cGCAGGCggucaGCCGCGCCGCGuggguugauGCCGCGc- -3'
miRNA:   3'- uCGUCCG-----CGGCGCGGUGC---------CGGCGCuu -5'
31008 3' -66 NC_006560.1 + 30548 0.76 0.095891
Target:  5'- aGGgAGGCGCCccgaggcgGCGCCGCGGCgCGCGc- -3'
miRNA:   3'- -UCgUCCGCGG--------CGCGGUGCCG-GCGCuu -5'
31008 3' -66 NC_006560.1 + 3258 0.75 0.103388
Target:  5'- gGGCGGcGCGCgGCGCCAgCcGCCGCGGGg -3'
miRNA:   3'- -UCGUC-CGCGgCGCGGU-GcCGGCGCUU- -5'
31008 3' -66 NC_006560.1 + 147109 0.75 0.106007
Target:  5'- gGGCGGGCGCgcgacgCGgGCCGCGG-CGCGAGg -3'
miRNA:   3'- -UCGUCCGCG------GCgCGGUGCCgGCGCUU- -5'
31008 3' -66 NC_006560.1 + 131395 0.75 0.108689
Target:  5'- uGGCGGGCGCUG-GCCGCGGaCGCGc- -3'
miRNA:   3'- -UCGUCCGCGGCgCGGUGCCgGCGCuu -5'
31008 3' -66 NC_006560.1 + 88441 0.75 0.108689
Target:  5'- cGGCGGGgGUCGCGcCCGCGGgCGCGc- -3'
miRNA:   3'- -UCGUCCgCGGCGC-GGUGCCgGCGCuu -5'
31008 3' -66 NC_006560.1 + 123969 0.75 0.111434
Target:  5'- gAGC-GGCGCCGgGCCGCGaaccCCGCGAc -3'
miRNA:   3'- -UCGuCCGCGGCgCGGUGCc---GGCGCUu -5'
31008 3' -66 NC_006560.1 + 101858 0.75 0.111434
Target:  5'- cGUAGcG-GCCGC-CCGCGGCCGCGAAc -3'
miRNA:   3'- uCGUC-CgCGGCGcGGUGCCGGCGCUU- -5'
31008 3' -66 NC_006560.1 + 99176 0.75 0.111434
Target:  5'- -cCGGGCGCCGCGCCcccggaggcgGCGccuGCCGCGAc -3'
miRNA:   3'- ucGUCCGCGGCGCGG----------UGC---CGGCGCUu -5'
31008 3' -66 NC_006560.1 + 81531 0.75 0.111434
Target:  5'- cGguGGCGgCGCGCCAgggcgugcuCGGCCGCGc- -3'
miRNA:   3'- uCguCCGCgGCGCGGU---------GCCGGCGCuu -5'
31008 3' -66 NC_006560.1 + 33571 0.75 0.114244
Target:  5'- gGGgGGGCGCC--GCCGCGGCCGcCGGAg -3'
miRNA:   3'- -UCgUCCGCGGcgCGGUGCCGGC-GCUU- -5'
31008 3' -66 NC_006560.1 + 27246 0.75 0.11625
Target:  5'- gGGCcGGCcCCGCccaaacccgcgccgGCCGCGGCCGCGGGg -3'
miRNA:   3'- -UCGuCCGcGGCG--------------CGGUGCCGGCGCUU- -5'
31008 3' -66 NC_006560.1 + 131829 0.75 0.11712
Target:  5'- cGCGGGC-CCGCguacGCCGCGGCgGCGGc -3'
miRNA:   3'- uCGUCCGcGGCG----CGGUGCCGgCGCUu -5'
31008 3' -66 NC_006560.1 + 4639 0.74 0.120063
Target:  5'- -cCAGGgGCaCGgGCCGCGGCCGCGc- -3'
miRNA:   3'- ucGUCCgCG-GCgCGGUGCCGGCGCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.