miRNA display CGI


Results 1 - 20 of 510 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31008 3' -66 NC_006560.1 + 121586 1.05 0.000595
Target:  5'- cAGCAGGCGCCGCGCCACGGCCGCGAAg -3'
miRNA:   3'- -UCGUCCGCGGCGCGGUGCCGGCGCUU- -5'
31008 3' -66 NC_006560.1 + 18956 0.84 0.022652
Target:  5'- cGGCGGGCGCCggGCGUCGCgGGCCGCGAc -3'
miRNA:   3'- -UCGUCCGCGG--CGCGGUG-CCGGCGCUu -5'
31008 3' -66 NC_006560.1 + 12586 0.83 0.027197
Target:  5'- gGGCAGGCGCaCGUGCUuggcggccgcGCGGCCGCGAc -3'
miRNA:   3'- -UCGUCCGCG-GCGCGG----------UGCCGGCGCUu -5'
31008 3' -66 NC_006560.1 + 95027 0.82 0.034382
Target:  5'- aGGCGGG-GCCgGCGCCGCGGCCGgGGAg -3'
miRNA:   3'- -UCGUCCgCGG-CGCGGUGCCGGCgCUU- -5'
31008 3' -66 NC_006560.1 + 69424 0.81 0.041124
Target:  5'- gAGCAGGCGCaCGCGCgGCucugcgaGGCCGCGGGg -3'
miRNA:   3'- -UCGUCCGCG-GCGCGgUG-------CCGGCGCUU- -5'
31008 3' -66 NC_006560.1 + 24917 0.79 0.052022
Target:  5'- cGCcGcCGCCGCGCCugGGCCGCGGc -3'
miRNA:   3'- uCGuCcGCGGCGCGGugCCGGCGCUu -5'
31008 3' -66 NC_006560.1 + 131066 0.79 0.056196
Target:  5'- cGGCGGGCGCCGCcgccgugcccGCCGCGGCCcUGAc -3'
miRNA:   3'- -UCGUCCGCGGCG----------CGGUGCCGGcGCUu -5'
31008 3' -66 NC_006560.1 + 76251 0.78 0.060694
Target:  5'- cAGCAGcGCGCCGagGCCACGGaCCGCGu- -3'
miRNA:   3'- -UCGUC-CGCGGCg-CGGUGCC-GGCGCuu -5'
31008 3' -66 NC_006560.1 + 75994 0.78 0.063884
Target:  5'- uGGgGGGCguGCCGCuggaccugGCCGCGGCCGCGGAg -3'
miRNA:   3'- -UCgUCCG--CGGCG--------CGGUGCCGGCGCUU- -5'
31008 3' -66 NC_006560.1 + 3764 0.78 0.063884
Target:  5'- cGGC-GGCGCCGCGCgGCGGgaCCGCGGc -3'
miRNA:   3'- -UCGuCCGCGGCGCGgUGCC--GGCGCUu -5'
31008 3' -66 NC_006560.1 + 3933 0.78 0.068975
Target:  5'- cGCGGGgGCgGCGCCGCGGUCgGCGGc -3'
miRNA:   3'- uCGUCCgCGgCGCGGUGCCGG-CGCUu -5'
31008 3' -66 NC_006560.1 + 60939 0.78 0.070757
Target:  5'- cGCcGGCGCCGcCGCCACGugcuccacgacGCCGCGGAg -3'
miRNA:   3'- uCGuCCGCGGC-GCGGUGC-----------CGGCGCUU- -5'
31008 3' -66 NC_006560.1 + 47033 0.77 0.072584
Target:  5'- cGCAGGCGgCGCGCCACGaCCGCc-- -3'
miRNA:   3'- uCGUCCGCgGCGCGGUGCcGGCGcuu -5'
31008 3' -66 NC_006560.1 + 118251 0.77 0.074266
Target:  5'- cGCGGGCgcggaccGCCGCGCCGCcccGGCCGUGGc -3'
miRNA:   3'- uCGUCCG-------CGGCGCGGUG---CCGGCGCUu -5'
31008 3' -66 NC_006560.1 + 88682 0.77 0.078338
Target:  5'- cGCGGGCuG-CGCGCCGCGGCCgGCGGc -3'
miRNA:   3'- uCGUCCG-CgGCGCGGUGCCGG-CGCUu -5'
31008 3' -66 NC_006560.1 + 4049 0.77 0.078338
Target:  5'- cGGCGcGGCGCCG-GCCGCGGCgGCGu- -3'
miRNA:   3'- -UCGU-CCGCGGCgCGGUGCCGgCGCuu -5'
31008 3' -66 NC_006560.1 + 150407 0.77 0.079138
Target:  5'- gGGCGGGCccuccCCGCGCCccgcgccccgcccccGCGGCCGCGGc -3'
miRNA:   3'- -UCGUCCGc----GGCGCGG---------------UGCCGGCGCUu -5'
31008 3' -66 NC_006560.1 + 78 0.77 0.079138
Target:  5'- gGGCGGGCccuccCCGCGCCccgcgccccgcccccGCGGCCGCGGc -3'
miRNA:   3'- -UCGUCCGc----GGCGCGG---------------UGCCGGCGCUu -5'
31008 3' -66 NC_006560.1 + 78061 0.77 0.080352
Target:  5'- gAGCuGGCgGCCgGCGgCGCGGCCGCGGc -3'
miRNA:   3'- -UCGuCCG-CGG-CGCgGUGCCGGCGCUu -5'
31008 3' -66 NC_006560.1 + 23331 0.77 0.082414
Target:  5'- cGGCcGGCGCCGCGCCGCcGCCcCGGGa -3'
miRNA:   3'- -UCGuCCGCGGCGCGGUGcCGGcGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.