miRNA display CGI


Results 1 - 20 of 510 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31008 3' -66 NC_006560.1 + 78 0.77 0.079138
Target:  5'- gGGCGGGCccuccCCGCGCCccgcgccccgcccccGCGGCCGCGGc -3'
miRNA:   3'- -UCGUCCGc----GGCGCGG---------------UGCCGGCGCUu -5'
31008 3' -66 NC_006560.1 + 189 0.67 0.372719
Target:  5'- cGCcGGCGuuuuuuuCCGCGCgCGCGccGCCGCGGGa -3'
miRNA:   3'- uCGuCCGC-------GGCGCG-GUGC--CGGCGCUU- -5'
31008 3' -66 NC_006560.1 + 517 0.66 0.4475
Target:  5'- -aCGGGCGCCggggggcgGCGgC-CGGCCGCGc- -3'
miRNA:   3'- ucGUCCGCGG--------CGCgGuGCCGGCGCuu -5'
31008 3' -66 NC_006560.1 + 1222 0.7 0.256117
Target:  5'- gGGCGGGgccccUGCCGCGCCcccacgcagccccgGCGGggcccCCGCGAAg -3'
miRNA:   3'- -UCGUCC-----GCGGCGCGG--------------UGCC-----GGCGCUU- -5'
31008 3' -66 NC_006560.1 + 1282 0.67 0.381298
Target:  5'- aAGCcccCGCCGCGCCG-GGCCGCc-- -3'
miRNA:   3'- -UCGuccGCGGCGCGGUgCCGGCGcuu -5'
31008 3' -66 NC_006560.1 + 1892 0.72 0.179126
Target:  5'- cGCGGGCgGCgGCGCCggcuaccaguccucgGCGGCCGCc-- -3'
miRNA:   3'- uCGUCCG-CGgCGCGG---------------UGCCGGCGcuu -5'
31008 3' -66 NC_006560.1 + 2052 0.7 0.240788
Target:  5'- cGGCGGcccaGCGCaCGCGCggCGCGGCgGCGGGg -3'
miRNA:   3'- -UCGUC----CGCG-GCGCG--GUGCCGgCGCUU- -5'
31008 3' -66 NC_006560.1 + 2175 0.73 0.142665
Target:  5'- cGGCGGGCagggccucggGCCcgGCGCgCGCGGCCGCGc- -3'
miRNA:   3'- -UCGUCCG----------CGG--CGCG-GUGCCGGCGCuu -5'
31008 3' -66 NC_006560.1 + 2265 0.7 0.240788
Target:  5'- cGCAGGCGCggugcgagUGCGCCuc-GCCGCGGc -3'
miRNA:   3'- uCGUCCGCG--------GCGCGGugcCGGCGCUu -5'
31008 3' -66 NC_006560.1 + 2300 0.67 0.38921
Target:  5'- aAGUcgGGcGCGCCG-GCgGCGGCCGCc-- -3'
miRNA:   3'- -UCG--UC-CGCGGCgCGgUGCCGGCGcuu -5'
31008 3' -66 NC_006560.1 + 2332 0.72 0.181714
Target:  5'- cGCGGGCGaguCgGCGgCGCGGCCGuCGAGc -3'
miRNA:   3'- uCGUCCGC---GgCGCgGUGCCGGC-GCUU- -5'
31008 3' -66 NC_006560.1 + 2368 0.69 0.288518
Target:  5'- cAGCAcGGCGCggcgguacuCGCGCgGCGGCaGCGGc -3'
miRNA:   3'- -UCGU-CCGCG---------GCGCGgUGCCGgCGCUu -5'
31008 3' -66 NC_006560.1 + 2421 0.66 0.425275
Target:  5'- -cCAGGCGCgUGCGCaCGCGguagcgcacguugccGCCGCGGc -3'
miRNA:   3'- ucGUCCGCG-GCGCG-GUGC---------------CGGCGCUu -5'
31008 3' -66 NC_006560.1 + 2554 0.69 0.294982
Target:  5'- gAGCAcGGCGCgGCGCa--GGUCGCGc- -3'
miRNA:   3'- -UCGU-CCGCGgCGCGgugCCGGCGCuu -5'
31008 3' -66 NC_006560.1 + 2705 0.67 0.373493
Target:  5'- aGGC-GGCgGCCG-GCgGCGGCCGCc-- -3'
miRNA:   3'- -UCGuCCG-CGGCgCGgUGCCGGCGcuu -5'
31008 3' -66 NC_006560.1 + 2887 0.66 0.4475
Target:  5'- gAGCAGGaaggagaggcCGCCGCGCgCGgCGGUCcagGCGGg -3'
miRNA:   3'- -UCGUCC----------GCGGCGCG-GU-GCCGG---CGCUu -5'
31008 3' -66 NC_006560.1 + 3090 0.72 0.186101
Target:  5'- gGGCGGGcCGCaGCG-CGCGGCCaGCGAGg -3'
miRNA:   3'- -UCGUCC-GCGgCGCgGUGCCGG-CGCUU- -5'
31008 3' -66 NC_006560.1 + 3258 0.75 0.103388
Target:  5'- gGGCGGcGCGCgGCGCCAgCcGCCGCGGGg -3'
miRNA:   3'- -UCGUC-CGCGgCGCGGU-GcCGGCGCUU- -5'
31008 3' -66 NC_006560.1 + 3304 0.74 0.132537
Target:  5'- gGGCGGGCGgugaGCGCCGCGGgCCGgGGg -3'
miRNA:   3'- -UCGUCCGCgg--CGCGGUGCC-GGCgCUu -5'
31008 3' -66 NC_006560.1 + 3428 0.7 0.224662
Target:  5'- cGGCGGGCGCgGgCGcCCGCGGggGCGAGg -3'
miRNA:   3'- -UCGUCCGCGgC-GC-GGUGCCggCGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.