miRNA display CGI


Results 1 - 20 of 510 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31008 3' -66 NC_006560.1 + 150518 0.67 0.372719
Target:  5'- cGCcGGCGuuuuuuuCCGCGCgCGCGccGCCGCGGGa -3'
miRNA:   3'- uCGuCCGC-------GGCGCG-GUGC--CGGCGCUU- -5'
31008 3' -66 NC_006560.1 + 150407 0.77 0.079138
Target:  5'- gGGCGGGCccuccCCGCGCCccgcgccccgcccccGCGGCCGCGGc -3'
miRNA:   3'- -UCGUCCGc----GGCGCGG---------------UGCCGGCGCUu -5'
31008 3' -66 NC_006560.1 + 150291 0.7 0.246374
Target:  5'- cGgAGGC-CCGCGCgCGCGccGCCGCGGGa -3'
miRNA:   3'- uCgUCCGcGGCGCG-GUGC--CGGCGCUU- -5'
31008 3' -66 NC_006560.1 + 150257 0.71 0.195157
Target:  5'- -uCGGGCGCCGCGggaggaCGCGGaCGCGAAa -3'
miRNA:   3'- ucGUCCGCGGCGCg-----GUGCCgGCGCUU- -5'
31008 3' -66 NC_006560.1 + 150148 0.74 0.132537
Target:  5'- cGGCGGGCGCgCGCGaCACggaaGGCCGCGc- -3'
miRNA:   3'- -UCGUCCGCG-GCGCgGUG----CCGGCGCuu -5'
31008 3' -66 NC_006560.1 + 150104 0.72 0.173213
Target:  5'- cAGCAGGCGCgaGCGCCcacccGCGcGCCgGCGGc -3'
miRNA:   3'- -UCGUCCGCGg-CGCGG-----UGC-CGG-CGCUu -5'
31008 3' -66 NC_006560.1 + 150059 0.74 0.123075
Target:  5'- cGGCGGccGCGCCccGCGCC-CGGCCGCGc- -3'
miRNA:   3'- -UCGUC--CGCGG--CGCGGuGCCGGCGCuu -5'
31008 3' -66 NC_006560.1 + 149990 0.66 0.4475
Target:  5'- cGCuaccGGgGCCGCGCUcgGGaCCGCGGg -3'
miRNA:   3'- uCGu---CCgCGGCGCGGugCC-GGCGCUu -5'
31008 3' -66 NC_006560.1 + 149921 0.68 0.321959
Target:  5'- cGGcCGGGCGCgGCGUCgguGGCCGCa-- -3'
miRNA:   3'- -UC-GUCCGCGgCGCGGug-CCGGCGcuu -5'
31008 3' -66 NC_006560.1 + 149823 0.67 0.365798
Target:  5'- gGGCggAGGCGgccUCGCgGCCccCGGCCGCGGg -3'
miRNA:   3'- -UCG--UCCGC---GGCG-CGGu-GCCGGCGCUu -5'
31008 3' -66 NC_006560.1 + 149177 0.66 0.435452
Target:  5'- cGCGGGgaGCCcaucagcauagacCGCCAUGGCgGCGAGg -3'
miRNA:   3'- uCGUCCg-CGGc------------GCGGUGCCGgCGCUU- -5'
31008 3' -66 NC_006560.1 + 149097 0.66 0.4475
Target:  5'- gGGCGGGCGCCGgGgCGuccCCGUGAAu -3'
miRNA:   3'- -UCGUCCGCGGCgCgGUgccGGCGCUU- -5'
31008 3' -66 NC_006560.1 + 148274 0.71 0.190582
Target:  5'- cGCGGG-GCCGCGagCGCGGCCGUa-- -3'
miRNA:   3'- uCGUCCgCGGCGCg-GUGCCGGCGcuu -5'
31008 3' -66 NC_006560.1 + 147971 0.66 0.416904
Target:  5'- gAGCucGGCGuCCGUGUCggcgucggaggcgggGCGGUCGCGGc -3'
miRNA:   3'- -UCGu-CCGC-GGCGCGG---------------UGCCGGCGCUu -5'
31008 3' -66 NC_006560.1 + 147303 0.68 0.336124
Target:  5'- uGGCGGGCGCCGgGCgGaaggugggguCcGCUGCGAGa -3'
miRNA:   3'- -UCGUCCGCGGCgCGgU----------GcCGGCGCUU- -5'
31008 3' -66 NC_006560.1 + 147139 0.68 0.321959
Target:  5'- ---nGGCGCgCGCGCCGCGgcGCCGCc-- -3'
miRNA:   3'- ucguCCGCG-GCGCGGUGC--CGGCGcuu -5'
31008 3' -66 NC_006560.1 + 147109 0.75 0.106007
Target:  5'- gGGCGGGCGCgcgacgCGgGCCGCGG-CGCGAGg -3'
miRNA:   3'- -UCGUCCGCG------GCgCGGUGCCgGCGCUU- -5'
31008 3' -66 NC_006560.1 + 146987 0.7 0.235308
Target:  5'- gGGCGGG-GCaugGCgGCuCGCGGCCGCGGGg -3'
miRNA:   3'- -UCGUCCgCGg--CG-CG-GUGCCGGCGCUU- -5'
31008 3' -66 NC_006560.1 + 146943 0.67 0.350738
Target:  5'- gGGCcuGGGC-CUGCGUCAgGGCCGgGGg -3'
miRNA:   3'- -UCG--UCCGcGGCGCGGUgCCGGCgCUu -5'
31008 3' -66 NC_006560.1 + 146886 0.66 0.438875
Target:  5'- gGGCcaGGGC-CUGgGCCAgGGCCGCc-- -3'
miRNA:   3'- -UCG--UCCGcGGCgCGGUgCCGGCGcuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.