Results 21 - 40 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31008 | 5' | -53.6 | NC_006560.1 | + | 65157 | 0.69 | 0.8507 |
Target: 5'- gGCcgCGuCGGCGGUgGUGAucgcggucccGGUGUCCCc -3' miRNA: 3'- aCGa-GC-GUCGUUAgCACU----------UCGCAGGG- -5' |
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31008 | 5' | -53.6 | NC_006560.1 | + | 121227 | 0.69 | 0.8507 |
Target: 5'- gGCUC-CAGCGuacCGUgGGAGCG-CCCg -3' miRNA: 3'- aCGAGcGUCGUua-GCA-CUUCGCaGGG- -5' |
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31008 | 5' | -53.6 | NC_006560.1 | + | 91327 | 0.68 | 0.895063 |
Target: 5'- aGCUCGagaaccuGCAGUaCGUGGacccGGCGgugCCCa -3' miRNA: 3'- aCGAGCgu-----CGUUA-GCACU----UCGCa--GGG- -5' |
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31008 | 5' | -53.6 | NC_006560.1 | + | 121727 | 0.68 | 0.907993 |
Target: 5'- gGCggGCAGCccggCG-GggGCGUCCg -3' miRNA: 3'- aCGagCGUCGuua-GCaCuuCGCAGGg -5' |
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31008 | 5' | -53.6 | NC_006560.1 | + | 55339 | 0.68 | 0.901649 |
Target: 5'- gGCUCGUGGCGGcCGUGguGC-UCCa -3' miRNA: 3'- aCGAGCGUCGUUaGCACuuCGcAGGg -5' |
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31008 | 5' | -53.6 | NC_006560.1 | + | 59667 | 0.68 | 0.895063 |
Target: 5'- gGCUUGCccgcggcuGCAAUUauaaGAAGCGUCCUg -3' miRNA: 3'- aCGAGCGu-------CGUUAGca--CUUCGCAGGG- -5' |
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31008 | 5' | -53.6 | NC_006560.1 | + | 81767 | 0.68 | 0.914093 |
Target: 5'- cUGCUCgGCcGUGAUCGUGccccccGGCGcCCCc -3' miRNA: 3'- -ACGAG-CGuCGUUAGCACu-----UCGCaGGG- -5' |
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31008 | 5' | -53.6 | NC_006560.1 | + | 127155 | 0.68 | 0.914093 |
Target: 5'- gGgUCGCGGCGucgagcUCG-GcGGCGUCCUg -3' miRNA: 3'- aCgAGCGUCGUu-----AGCaCuUCGCAGGG- -5' |
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31008 | 5' | -53.6 | NC_006560.1 | + | 150096 | 0.68 | 0.907993 |
Target: 5'- aGCUCggGCAGCAggCGc-GAGCG-CCCa -3' miRNA: 3'- aCGAG--CGUCGUuaGCacUUCGCaGGG- -5' |
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31008 | 5' | -53.6 | NC_006560.1 | + | 81051 | 0.68 | 0.907993 |
Target: 5'- cGCUCGCccAGCGggugGUCGUGGGuGUgGUCCa -3' miRNA: 3'- aCGAGCG--UCGU----UAGCACUU-CG-CAGGg -5' |
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31008 | 5' | -53.6 | NC_006560.1 | + | 65851 | 0.68 | 0.914093 |
Target: 5'- gUGC-CGCAuGCAG-CG-GggGUGUCCUc -3' miRNA: 3'- -ACGaGCGU-CGUUaGCaCuuCGCAGGG- -5' |
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31008 | 5' | -53.6 | NC_006560.1 | + | 3231 | 0.68 | 0.895063 |
Target: 5'- gGCggGCGGCGG-CGUGuGGGCGggCCCg -3' miRNA: 3'- aCGagCGUCGUUaGCAC-UUCGCa-GGG- -5' |
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31008 | 5' | -53.6 | NC_006560.1 | + | 138841 | 0.68 | 0.907993 |
Target: 5'- cGUugUCGCGGUGGaCGUGGaccggGGCGUCCg -3' miRNA: 3'- aCG--AGCGUCGUUaGCACU-----UCGCAGGg -5' |
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31008 | 5' | -53.6 | NC_006560.1 | + | 78164 | 0.67 | 0.9455 |
Target: 5'- cGCUCGCcgcucuGUggUCGUGcauGUuUCCCg -3' miRNA: 3'- aCGAGCGu-----CGuuAGCACuu-CGcAGGG- -5' |
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31008 | 5' | -53.6 | NC_006560.1 | + | 19393 | 0.67 | 0.940883 |
Target: 5'- cGCUCGCGGCAcgggccgggcgaGUCGccGcGGCGgcgCUCg -3' miRNA: 3'- aCGAGCGUCGU------------UAGCa-CuUCGCa--GGG- -5' |
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31008 | 5' | -53.6 | NC_006560.1 | + | 93815 | 0.67 | 0.940883 |
Target: 5'- aGCUCGCGGCGc---UGAAGCucaacgCCCu -3' miRNA: 3'- aCGAGCGUCGUuagcACUUCGca----GGG- -5' |
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31008 | 5' | -53.6 | NC_006560.1 | + | 26573 | 0.67 | 0.940883 |
Target: 5'- cGUgagCGCGGCGGcCG-GAAGCGaaCCCg -3' miRNA: 3'- aCGa--GCGUCGUUaGCaCUUCGCa-GGG- -5' |
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31008 | 5' | -53.6 | NC_006560.1 | + | 55031 | 0.67 | 0.945049 |
Target: 5'- gGCgCGCGGCGAgacgagcgacggaUCGUcuGGGCGUCgCCg -3' miRNA: 3'- aCGaGCGUCGUU-------------AGCAc-UUCGCAG-GG- -5' |
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31008 | 5' | -53.6 | NC_006560.1 | + | 82068 | 0.67 | 0.9455 |
Target: 5'- aGUccgCGCGGCGGUCGgcguagGAcuuucGGCGaCCCa -3' miRNA: 3'- aCGa--GCGUCGUUAGCa-----CU-----UCGCaGGG- -5' |
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31008 | 5' | -53.6 | NC_006560.1 | + | 131165 | 0.67 | 0.9455 |
Target: 5'- gGCUCuggGCGGCGGcCGccgcgGggGCG-CCCg -3' miRNA: 3'- aCGAG---CGUCGUUaGCa----CuuCGCaGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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