miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31008 5' -53.6 NC_006560.1 + 40922 0.66 0.96728
Target:  5'- gGCacagCGCGGCGGggucccgcgggucuUCGgGggGCG-CCCg -3'
miRNA:   3'- aCGa---GCGUCGUU--------------AGCaCuuCGCaGGG- -5'
31008 5' -53.6 NC_006560.1 + 42533 0.66 0.949447
Target:  5'- aGC-CGCAGCcccagcgccccggGGUCGcgcgggGAGGCG-CCCg -3'
miRNA:   3'- aCGaGCGUCG-------------UUAGCa-----CUUCGCaGGG- -5'
31008 5' -53.6 NC_006560.1 + 42714 0.66 0.949874
Target:  5'- cGuCUCGCGucagggccGCGAUCGccgGggGCGUgUCCg -3'
miRNA:   3'- aC-GAGCGU--------CGUUAGCa--CuuCGCA-GGG- -5'
31008 5' -53.6 NC_006560.1 + 42845 0.67 0.930911
Target:  5'- gGCgggGCGGCGGgccagcCGUGggGCGUCa- -3'
miRNA:   3'- aCGag-CGUCGUUa-----GCACuuCGCAGgg -5'
31008 5' -53.6 NC_006560.1 + 43714 0.66 0.968222
Target:  5'- aGCgagCGCAGCGAcUCGccgGgcGCGUacUCCg -3'
miRNA:   3'- aCGa--GCGUCGUU-AGCa--CuuCGCA--GGG- -5'
31008 5' -53.6 NC_006560.1 + 43926 0.66 0.965006
Target:  5'- cGCUCgaaGCGGCAGaCGaacaUGggGCGcacgcgCCCg -3'
miRNA:   3'- aCGAG---CGUCGUUaGC----ACuuCGCa-----GGG- -5'
31008 5' -53.6 NC_006560.1 + 51149 0.67 0.936518
Target:  5'- cUGcCUCGCGGCGcgCGaggccgccuuucuggGgcGCGUCCUc -3'
miRNA:   3'- -AC-GAGCGUCGUuaGCa--------------CuuCGCAGGG- -5'
31008 5' -53.6 NC_006560.1 + 52329 0.67 0.930911
Target:  5'- gGCUCGuCGGCGcggcCGUGG-GCG-CCCu -3'
miRNA:   3'- aCGAGC-GUCGUua--GCACUuCGCaGGG- -5'
31008 5' -53.6 NC_006560.1 + 55031 0.67 0.945049
Target:  5'- gGCgCGCGGCGAgacgagcgacggaUCGUcuGGGCGUCgCCg -3'
miRNA:   3'- aCGaGCGUCGUU-------------AGCAc-UUCGCAG-GG- -5'
31008 5' -53.6 NC_006560.1 + 55339 0.68 0.901649
Target:  5'- gGCUCGUGGCGGcCGUGguGC-UCCa -3'
miRNA:   3'- aCGAGCGUCGUUaGCACuuCGcAGGg -5'
31008 5' -53.6 NC_006560.1 + 56022 0.7 0.808043
Target:  5'- aGCUCGUgcaccacgaGGCGcugCGUGggGaagGUCCCg -3'
miRNA:   3'- aCGAGCG---------UCGUua-GCACuuCg--CAGGG- -5'
31008 5' -53.6 NC_006560.1 + 59667 0.68 0.895063
Target:  5'- gGCUUGCccgcggcuGCAAUUauaaGAAGCGUCCUg -3'
miRNA:   3'- aCGAGCGu-------CGUUAGca--CUUCGCAGGG- -5'
31008 5' -53.6 NC_006560.1 + 62860 0.72 0.721638
Target:  5'- aGCUccCGCAGCAGcgCGUGuuggggcgcAGCGUCUCg -3'
miRNA:   3'- aCGA--GCGUCGUUa-GCACu--------UCGCAGGG- -5'
31008 5' -53.6 NC_006560.1 + 65157 0.69 0.8507
Target:  5'- gGCcgCGuCGGCGGUgGUGAucgcggucccGGUGUCCCc -3'
miRNA:   3'- aCGa-GC-GUCGUUAgCACU----------UCGCAGGG- -5'
31008 5' -53.6 NC_006560.1 + 65851 0.68 0.914093
Target:  5'- gUGC-CGCAuGCAG-CG-GggGUGUCCUc -3'
miRNA:   3'- -ACGaGCGU-CGUUaGCaCuuCGCAGGG- -5'
31008 5' -53.6 NC_006560.1 + 69450 0.67 0.93602
Target:  5'- gGCcgCGgGGCuggCGgGggGCGUCCUg -3'
miRNA:   3'- aCGa-GCgUCGuuaGCaCuuCGCAGGG- -5'
31008 5' -53.6 NC_006560.1 + 70826 0.66 0.949874
Target:  5'- cGC-CGCGGCGGUCcG-GGAG-GUCCUc -3'
miRNA:   3'- aCGaGCGUCGUUAG-CaCUUCgCAGGG- -5'
31008 5' -53.6 NC_006560.1 + 72173 0.69 0.881179
Target:  5'- cGUUCGUcgAGCGAcgCGccguGGCGUCCCa -3'
miRNA:   3'- aCGAGCG--UCGUUa-GCacu-UCGCAGGG- -5'
31008 5' -53.6 NC_006560.1 + 77466 0.7 0.816939
Target:  5'- cGCUCGCGGCca-UGUGcacCGUCCCc -3'
miRNA:   3'- aCGAGCGUCGuuaGCACuucGCAGGG- -5'
31008 5' -53.6 NC_006560.1 + 78164 0.67 0.9455
Target:  5'- cGCUCGCcgcucuGUggUCGUGcauGUuUCCCg -3'
miRNA:   3'- aCGAGCGu-----CGuuAGCACuu-CGcAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.