miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31008 5' -53.6 NC_006560.1 + 307 0.66 0.968222
Target:  5'- cGCaacgCGCAGCcc-CGUGAAG-GcCCCg -3'
miRNA:   3'- aCGa---GCGUCGuuaGCACUUCgCaGGG- -5'
31008 5' -53.6 NC_006560.1 + 3032 0.7 0.816939
Target:  5'- cGCggCGCAGCGGgcccgaggCGcGGAGCGgCCCg -3'
miRNA:   3'- aCGa-GCGUCGUUa-------GCaCUUCGCaGGG- -5'
31008 5' -53.6 NC_006560.1 + 3231 0.68 0.895063
Target:  5'- gGCggGCGGCGG-CGUGuGGGCGggCCCg -3'
miRNA:   3'- aCGagCGUCGUUaGCAC-UUCGCa-GGG- -5'
31008 5' -53.6 NC_006560.1 + 4656 0.74 0.628747
Target:  5'- gGCcgCGCGGC---CGUGAAGCGgCCCg -3'
miRNA:   3'- aCGa-GCGUCGuuaGCACUUCGCaGGG- -5'
31008 5' -53.6 NC_006560.1 + 5075 0.66 0.954007
Target:  5'- aGCUCGUcGCcggCGUGcGGCGcgccgCCCg -3'
miRNA:   3'- aCGAGCGuCGuuaGCACuUCGCa----GGG- -5'
31008 5' -53.6 NC_006560.1 + 10425 0.67 0.925553
Target:  5'- gGcCUCGCGGag--CGUc-AGCGUCCCg -3'
miRNA:   3'- aC-GAGCGUCguuaGCAcuUCGCAGGG- -5'
31008 5' -53.6 NC_006560.1 + 13211 0.7 0.816939
Target:  5'- cGCUCGUGGCGcugaagcuGUCGUaGAAGC-UCCa -3'
miRNA:   3'- aCGAGCGUCGU--------UAGCA-CUUCGcAGGg -5'
31008 5' -53.6 NC_006560.1 + 15245 0.7 0.84255
Target:  5'- gGC-CGguGCGGUCGggGAGGCGgacgCCg -3'
miRNA:   3'- aCGaGCguCGUUAGCa-CUUCGCa---GGg -5'
31008 5' -53.6 NC_006560.1 + 17241 0.66 0.957525
Target:  5'- gGCggCGCAGCAGccucgccUCGUGGAcggagcucGCGUaccacCCCg -3'
miRNA:   3'- aCGa-GCGUCGUU-------AGCACUU--------CGCA-----GGG- -5'
31008 5' -53.6 NC_006560.1 + 18621 0.67 0.93602
Target:  5'- gGCgCGCGGCucGUCGccguucGCGUCCCc -3'
miRNA:   3'- aCGaGCGUCGu-UAGCacuu--CGCAGGG- -5'
31008 5' -53.6 NC_006560.1 + 19393 0.67 0.940883
Target:  5'- cGCUCGCGGCAcgggccgggcgaGUCGccGcGGCGgcgCUCg -3'
miRNA:   3'- aCGAGCGUCGU------------UAGCa-CuUCGCa--GGG- -5'
31008 5' -53.6 NC_006560.1 + 19728 0.7 0.807144
Target:  5'- aUGCUCGCgcggggacgggGGC-AUCGgcagGAucuccccGGCGUCCCc -3'
miRNA:   3'- -ACGAGCG-----------UCGuUAGCa---CU-------UCGCAGGG- -5'
31008 5' -53.6 NC_006560.1 + 26573 0.67 0.940883
Target:  5'- cGUgagCGCGGCGGcCG-GAAGCGaaCCCg -3'
miRNA:   3'- aCGa--GCGUCGUUaGCaCUUCGCa-GGG- -5'
31008 5' -53.6 NC_006560.1 + 27626 0.67 0.930911
Target:  5'- aGCUCGCGGCGGgcgCGgccgggcgcGggGCGcggCCg -3'
miRNA:   3'- aCGAGCGUCGUUa--GCa--------CuuCGCa--GGg -5'
31008 5' -53.6 NC_006560.1 + 29436 0.66 0.965006
Target:  5'- cGCUCGCGGCcccgCGcuacuccGCGUCCg -3'
miRNA:   3'- aCGAGCGUCGuua-GCacuu---CGCAGGg -5'
31008 5' -53.6 NC_006560.1 + 33765 0.66 0.968222
Target:  5'- cGCUCGCGggucgccucGCGGggcCGUGggGCG-CgCg -3'
miRNA:   3'- aCGAGCGU---------CGUUa--GCACuuCGCaGgG- -5'
31008 5' -53.6 NC_006560.1 + 34452 0.66 0.949874
Target:  5'- gGCg-GCGGUggUCGcggGggGCGUUCg -3'
miRNA:   3'- aCGagCGUCGuuAGCa--CuuCGCAGGg -5'
31008 5' -53.6 NC_006560.1 + 34779 0.67 0.930911
Target:  5'- cGCcCGCAGguGUCG-GggGCugcgggGUUCCg -3'
miRNA:   3'- aCGaGCGUCguUAGCaCuuCG------CAGGG- -5'
31008 5' -53.6 NC_006560.1 + 38426 0.67 0.940883
Target:  5'- aGCUCGCAGguG-CGacUGGAGCacUCCUg -3'
miRNA:   3'- aCGAGCGUCguUaGC--ACUUCGc-AGGG- -5'
31008 5' -53.6 NC_006560.1 + 39620 0.69 0.8507
Target:  5'- cGC-CGCGGCGggCGUc-GGCGUCCg -3'
miRNA:   3'- aCGaGCGUCGUuaGCAcuUCGCAGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.