miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31008 5' -53.6 NC_006560.1 + 150096 0.68 0.907993
Target:  5'- aGCUCggGCAGCAggCGc-GAGCG-CCCa -3'
miRNA:   3'- aCGAG--CGUCGUuaGCacUUCGCaGGG- -5'
31008 5' -53.6 NC_006560.1 + 147935 0.67 0.93602
Target:  5'- gGCcCGCGGCcccCGgGAGGCGggCCCg -3'
miRNA:   3'- aCGaGCGUCGuuaGCaCUUCGCa-GGG- -5'
31008 5' -53.6 NC_006560.1 + 146842 0.67 0.93602
Target:  5'- gUGCU-GCGGCGGcgCGgggcGggGCGgcgCCCg -3'
miRNA:   3'- -ACGAgCGUCGUUa-GCa---CuuCGCa--GGG- -5'
31008 5' -53.6 NC_006560.1 + 145826 0.66 0.957904
Target:  5'- gGCcucgCGCGGCGGgcCG-GggGCGcCCCc -3'
miRNA:   3'- aCGa---GCGUCGUUa-GCaCuuCGCaGGG- -5'
31008 5' -53.6 NC_006560.1 + 143591 0.67 0.923897
Target:  5'- gGUUCGCgAGCGAgaggCGUGGcggcgagacagagaGGCGgugCCCc -3'
miRNA:   3'- aCGAGCG-UCGUUa---GCACU--------------UCGCa--GGG- -5'
31008 5' -53.6 NC_006560.1 + 138841 0.68 0.907993
Target:  5'- cGUugUCGCGGUGGaCGUGGaccggGGCGUCCg -3'
miRNA:   3'- aCG--AGCGUCGUUaGCACU-----UCGCAGGg -5'
31008 5' -53.6 NC_006560.1 + 136090 0.66 0.949874
Target:  5'- gGCUgGCGGCGuucaCGcacGggGCGcUCCCc -3'
miRNA:   3'- aCGAgCGUCGUua--GCa--CuuCGC-AGGG- -5'
31008 5' -53.6 NC_006560.1 + 133149 0.67 0.93602
Target:  5'- gGC-CGCGGCAGcgCGcGAAGUaGUCCUc -3'
miRNA:   3'- aCGaGCGUCGUUa-GCaCUUCG-CAGGG- -5'
31008 5' -53.6 NC_006560.1 + 131165 0.67 0.9455
Target:  5'- gGCUCuggGCGGCGGcCGccgcgGggGCG-CCCg -3'
miRNA:   3'- aCGAG---CGUCGUUaGCa----CuuCGCaGGG- -5'
31008 5' -53.6 NC_006560.1 + 129913 0.66 0.968222
Target:  5'- gUGCcugCGCAcGCGcgCGgccgGAGGCGcgcagCCCg -3'
miRNA:   3'- -ACGa--GCGU-CGUuaGCa---CUUCGCa----GGG- -5'
31008 5' -53.6 NC_006560.1 + 127155 0.68 0.914093
Target:  5'- gGgUCGCGGCGucgagcUCG-GcGGCGUCCUg -3'
miRNA:   3'- aCgAGCGUCGUu-----AGCaCuUCGCAGGG- -5'
31008 5' -53.6 NC_006560.1 + 122888 0.7 0.825661
Target:  5'- aGCUCGCGGCcacccugcUCGUGGGcgacuGCG-CCCu -3'
miRNA:   3'- aCGAGCGUCGuu------AGCACUU-----CGCaGGG- -5'
31008 5' -53.6 NC_006560.1 + 121727 0.68 0.907993
Target:  5'- gGCggGCAGCccggCG-GggGCGUCCg -3'
miRNA:   3'- aCGagCGUCGuua-GCaCuuCGCAGGg -5'
31008 5' -53.6 NC_006560.1 + 121622 1.11 0.003225
Target:  5'- gUGCUCGCAGCAAUCGUGAAGCGUCCCc -3'
miRNA:   3'- -ACGAGCGUCGUUAGCACUUCGCAGGG- -5'
31008 5' -53.6 NC_006560.1 + 121227 0.69 0.8507
Target:  5'- gGCUC-CAGCGuacCGUgGGAGCG-CCCg -3'
miRNA:   3'- aCGAGcGUCGUua-GCA-CUUCGCaGGG- -5'
31008 5' -53.6 NC_006560.1 + 118859 0.67 0.930911
Target:  5'- cGCcuUUGCGGCGcgCGUGcagacGGCGUgCCu -3'
miRNA:   3'- aCG--AGCGUCGUuaGCACu----UCGCAgGG- -5'
31008 5' -53.6 NC_006560.1 + 118029 0.66 0.957904
Target:  5'- -cCUgGCGGCGGggcUCGgcgGggGCGggCCCg -3'
miRNA:   3'- acGAgCGUCGUU---AGCa--CuuCGCa-GGG- -5'
31008 5' -53.6 NC_006560.1 + 115749 0.67 0.93602
Target:  5'- gGCggCGCAGCuGAUCcacccGAGGCG-CCCg -3'
miRNA:   3'- aCGa-GCGUCG-UUAGca---CUUCGCaGGG- -5'
31008 5' -53.6 NC_006560.1 + 115562 0.72 0.751508
Target:  5'- cGCUCGUGGCGAaCGUGGAGCa---- -3'
miRNA:   3'- aCGAGCGUCGUUaGCACUUCGcaggg -5'
31008 5' -53.6 NC_006560.1 + 115439 0.7 0.816939
Target:  5'- cGCUCGCGcGCGAgaUCGUGgcGCGgCUg -3'
miRNA:   3'- aCGAGCGU-CGUU--AGCACuuCGCaGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.