miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31008 5' -53.6 NC_006560.1 + 121622 1.11 0.003225
Target:  5'- gUGCUCGCAGCAAUCGUGAAGCGUCCCc -3'
miRNA:   3'- -ACGAGCGUCGUUAGCACUUCGCAGGG- -5'
31008 5' -53.6 NC_006560.1 + 88188 0.75 0.576809
Target:  5'- cGCUCGCAGaGGUCGcggGggGCGcggcagCCCa -3'
miRNA:   3'- aCGAGCGUCgUUAGCa--CuuCGCa-----GGG- -5'
31008 5' -53.6 NC_006560.1 + 4656 0.74 0.628747
Target:  5'- gGCcgCGCGGC---CGUGAAGCGgCCCg -3'
miRNA:   3'- aCGa-GCGUCGuuaGCACUUCGCaGGG- -5'
31008 5' -53.6 NC_006560.1 + 62860 0.72 0.721638
Target:  5'- aGCUccCGCAGCAGcgCGUGuuggggcgcAGCGUCUCg -3'
miRNA:   3'- aCGA--GCGUCGUUa-GCACu--------UCGCAGGG- -5'
31008 5' -53.6 NC_006560.1 + 115562 0.72 0.751508
Target:  5'- cGCUCGUGGCGAaCGUGGAGCa---- -3'
miRNA:   3'- aCGAGCGUCGUUaGCACUUCGcaggg -5'
31008 5' -53.6 NC_006560.1 + 19728 0.7 0.807144
Target:  5'- aUGCUCGCgcggggacgggGGC-AUCGgcagGAucuccccGGCGUCCCc -3'
miRNA:   3'- -ACGAGCG-----------UCGuUAGCa---CU-------UCGCAGGG- -5'
31008 5' -53.6 NC_006560.1 + 56022 0.7 0.808043
Target:  5'- aGCUCGUgcaccacgaGGCGcugCGUGggGaagGUCCCg -3'
miRNA:   3'- aCGAGCG---------UCGUua-GCACuuCg--CAGGG- -5'
31008 5' -53.6 NC_006560.1 + 77466 0.7 0.816939
Target:  5'- cGCUCGCGGCca-UGUGcacCGUCCCc -3'
miRNA:   3'- aCGAGCGUCGuuaGCACuucGCAGGG- -5'
31008 5' -53.6 NC_006560.1 + 3032 0.7 0.816939
Target:  5'- cGCggCGCAGCGGgcccgaggCGcGGAGCGgCCCg -3'
miRNA:   3'- aCGa-GCGUCGUUa-------GCaCUUCGCaGGG- -5'
31008 5' -53.6 NC_006560.1 + 115439 0.7 0.816939
Target:  5'- cGCUCGCGcGCGAgaUCGUGgcGCGgCUg -3'
miRNA:   3'- aCGAGCGU-CGUU--AGCACuuCGCaGGg -5'
31008 5' -53.6 NC_006560.1 + 13211 0.7 0.816939
Target:  5'- cGCUCGUGGCGcugaagcuGUCGUaGAAGC-UCCa -3'
miRNA:   3'- aCGAGCGUCGU--------UAGCA-CUUCGcAGGg -5'
31008 5' -53.6 NC_006560.1 + 122888 0.7 0.825661
Target:  5'- aGCUCGCGGCcacccugcUCGUGGGcgacuGCG-CCCu -3'
miRNA:   3'- aCGAGCGUCGuu------AGCACUU-----CGCaGGG- -5'
31008 5' -53.6 NC_006560.1 + 15245 0.7 0.84255
Target:  5'- gGC-CGguGCGGUCGggGAGGCGgacgCCg -3'
miRNA:   3'- aCGaGCguCGUUAGCa-CUUCGCa---GGg -5'
31008 5' -53.6 NC_006560.1 + 93152 0.69 0.8507
Target:  5'- cGCUCuagGGCGccgCGUGucGCGUCCCc -3'
miRNA:   3'- aCGAGcg-UCGUua-GCACuuCGCAGGG- -5'
31008 5' -53.6 NC_006560.1 + 39620 0.69 0.8507
Target:  5'- cGC-CGCGGCGggCGUc-GGCGUCCg -3'
miRNA:   3'- aCGaGCGUCGUuaGCAcuUCGCAGGg -5'
31008 5' -53.6 NC_006560.1 + 121227 0.69 0.8507
Target:  5'- gGCUC-CAGCGuacCGUgGGAGCG-CCCg -3'
miRNA:   3'- aCGAGcGUCGUua-GCA-CUUCGCaGGG- -5'
31008 5' -53.6 NC_006560.1 + 65157 0.69 0.8507
Target:  5'- gGCcgCGuCGGCGGUgGUGAucgcggucccGGUGUCCCc -3'
miRNA:   3'- aCGa-GC-GUCGUUAgCACU----------UCGCAGGG- -5'
31008 5' -53.6 NC_006560.1 + 101620 0.69 0.858645
Target:  5'- cGCgagCGCGGUGAUgGUGuuuGCGguggCCCg -3'
miRNA:   3'- aCGa--GCGUCGUUAgCACuu-CGCa---GGG- -5'
31008 5' -53.6 NC_006560.1 + 107690 0.69 0.866377
Target:  5'- -aUUCGaggAGCGAUCGg--GGCGUCCCg -3'
miRNA:   3'- acGAGCg--UCGUUAGCacuUCGCAGGG- -5'
31008 5' -53.6 NC_006560.1 + 82710 0.69 0.881179
Target:  5'- cUGCUgGUGGCGugccaCGUGAuuGGCGUgCCg -3'
miRNA:   3'- -ACGAgCGUCGUua---GCACU--UCGCAgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.