miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31008 5' -53.6 NC_006560.1 + 118859 0.67 0.930911
Target:  5'- cGCcuUUGCGGCGcgCGUGcagacGGCGUgCCu -3'
miRNA:   3'- aCG--AGCGUCGUuaGCACu----UCGCAgGG- -5'
31008 5' -53.6 NC_006560.1 + 52329 0.67 0.930911
Target:  5'- gGCUCGuCGGCGcggcCGUGG-GCG-CCCu -3'
miRNA:   3'- aCGAGC-GUCGUua--GCACUuCGCaGGG- -5'
31008 5' -53.6 NC_006560.1 + 42845 0.67 0.930911
Target:  5'- gGCgggGCGGCGGgccagcCGUGggGCGUCa- -3'
miRNA:   3'- aCGag-CGUCGUUa-----GCACuuCGCAGgg -5'
31008 5' -53.6 NC_006560.1 + 34779 0.67 0.930911
Target:  5'- cGCcCGCAGguGUCG-GggGCugcgggGUUCCg -3'
miRNA:   3'- aCGaGCGUCguUAGCaCuuCG------CAGGG- -5'
31008 5' -53.6 NC_006560.1 + 27626 0.67 0.930911
Target:  5'- aGCUCGCGGCGGgcgCGgccgggcgcGggGCGcggCCg -3'
miRNA:   3'- aCGAGCGUCGUUa--GCa--------CuuCGCa--GGg -5'
31008 5' -53.6 NC_006560.1 + 10425 0.67 0.925553
Target:  5'- gGcCUCGCGGag--CGUc-AGCGUCCCg -3'
miRNA:   3'- aC-GAGCGUCguuaGCAcuUCGCAGGG- -5'
31008 5' -53.6 NC_006560.1 + 95952 0.67 0.925553
Target:  5'- aGCUCGCGGCcggCGggccGGAGuCGacgCCCg -3'
miRNA:   3'- aCGAGCGUCGuuaGCa---CUUC-GCa--GGG- -5'
31008 5' -53.6 NC_006560.1 + 143591 0.67 0.923897
Target:  5'- gGUUCGCgAGCGAgaggCGUGGcggcgagacagagaGGCGgugCCCc -3'
miRNA:   3'- aCGAGCG-UCGUUa---GCACU--------------UCGCa--GGG- -5'
31008 5' -53.6 NC_006560.1 + 127155 0.68 0.914093
Target:  5'- gGgUCGCGGCGucgagcUCG-GcGGCGUCCUg -3'
miRNA:   3'- aCgAGCGUCGUu-----AGCaCuUCGCAGGG- -5'
31008 5' -53.6 NC_006560.1 + 81767 0.68 0.914093
Target:  5'- cUGCUCgGCcGUGAUCGUGccccccGGCGcCCCc -3'
miRNA:   3'- -ACGAG-CGuCGUUAGCACu-----UCGCaGGG- -5'
31008 5' -53.6 NC_006560.1 + 65851 0.68 0.914093
Target:  5'- gUGC-CGCAuGCAG-CG-GggGUGUCCUc -3'
miRNA:   3'- -ACGaGCGU-CGUUaGCaCuuCGCAGGG- -5'
31008 5' -53.6 NC_006560.1 + 150096 0.68 0.907993
Target:  5'- aGCUCggGCAGCAggCGc-GAGCG-CCCa -3'
miRNA:   3'- aCGAG--CGUCGUuaGCacUUCGCaGGG- -5'
31008 5' -53.6 NC_006560.1 + 121727 0.68 0.907993
Target:  5'- gGCggGCAGCccggCG-GggGCGUCCg -3'
miRNA:   3'- aCGagCGUCGuua-GCaCuuCGCAGGg -5'
31008 5' -53.6 NC_006560.1 + 138841 0.68 0.907993
Target:  5'- cGUugUCGCGGUGGaCGUGGaccggGGCGUCCg -3'
miRNA:   3'- aCG--AGCGUCGUUaGCACU-----UCGCAGGg -5'
31008 5' -53.6 NC_006560.1 + 81051 0.68 0.907993
Target:  5'- cGCUCGCccAGCGggugGUCGUGGGuGUgGUCCa -3'
miRNA:   3'- aCGAGCG--UCGU----UAGCACUU-CG-CAGGg -5'
31008 5' -53.6 NC_006560.1 + 55339 0.68 0.901649
Target:  5'- gGCUCGUGGCGGcCGUGguGC-UCCa -3'
miRNA:   3'- aCGAGCGUCGUUaGCACuuCGcAGGg -5'
31008 5' -53.6 NC_006560.1 + 59667 0.68 0.895063
Target:  5'- gGCUUGCccgcggcuGCAAUUauaaGAAGCGUCCUg -3'
miRNA:   3'- aCGAGCGu-------CGUUAGca--CUUCGCAGGG- -5'
31008 5' -53.6 NC_006560.1 + 3231 0.68 0.895063
Target:  5'- gGCggGCGGCGG-CGUGuGGGCGggCCCg -3'
miRNA:   3'- aCGagCGUCGUUaGCAC-UUCGCa-GGG- -5'
31008 5' -53.6 NC_006560.1 + 91327 0.68 0.895063
Target:  5'- aGCUCGagaaccuGCAGUaCGUGGacccGGCGgugCCCa -3'
miRNA:   3'- aCGAGCgu-----CGUUA-GCACU----UCGCa--GGG- -5'
31008 5' -53.6 NC_006560.1 + 80918 0.69 0.881179
Target:  5'- cGCggggCGCAGcCAGUCGccGGGCGccUCCCc -3'
miRNA:   3'- aCGa---GCGUC-GUUAGCacUUCGC--AGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.