miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31008 5' -53.6 NC_006560.1 + 136090 0.66 0.949874
Target:  5'- gGCUgGCGGCGuucaCGcacGggGCGcUCCCc -3'
miRNA:   3'- aCGAgCGUCGUua--GCa--CuuCGC-AGGG- -5'
31008 5' -53.6 NC_006560.1 + 70826 0.66 0.949874
Target:  5'- cGC-CGCGGCGGUCcG-GGAG-GUCCUc -3'
miRNA:   3'- aCGaGCGUCGUUAG-CaCUUCgCAGGG- -5'
31008 5' -53.6 NC_006560.1 + 42533 0.66 0.949447
Target:  5'- aGC-CGCAGCcccagcgccccggGGUCGcgcgggGAGGCG-CCCg -3'
miRNA:   3'- aCGaGCGUCG-------------UUAGCa-----CUUCGCaGGG- -5'
31008 5' -53.6 NC_006560.1 + 82068 0.67 0.9455
Target:  5'- aGUccgCGCGGCGGUCGgcguagGAcuuucGGCGaCCCa -3'
miRNA:   3'- aCGa--GCGUCGUUAGCa-----CU-----UCGCaGGG- -5'
31008 5' -53.6 NC_006560.1 + 131165 0.67 0.9455
Target:  5'- gGCUCuggGCGGCGGcCGccgcgGggGCG-CCCg -3'
miRNA:   3'- aCGAG---CGUCGUUaGCa----CuuCGCaGGG- -5'
31008 5' -53.6 NC_006560.1 + 78164 0.67 0.9455
Target:  5'- cGCUCGCcgcucuGUggUCGUGcauGUuUCCCg -3'
miRNA:   3'- aCGAGCGu-----CGuuAGCACuu-CGcAGGG- -5'
31008 5' -53.6 NC_006560.1 + 55031 0.67 0.945049
Target:  5'- gGCgCGCGGCGAgacgagcgacggaUCGUcuGGGCGUCgCCg -3'
miRNA:   3'- aCGaGCGUCGUU-------------AGCAc-UUCGCAG-GG- -5'
31008 5' -53.6 NC_006560.1 + 38426 0.67 0.940883
Target:  5'- aGCUCGCAGguG-CGacUGGAGCacUCCUg -3'
miRNA:   3'- aCGAGCGUCguUaGC--ACUUCGc-AGGG- -5'
31008 5' -53.6 NC_006560.1 + 100173 0.67 0.940883
Target:  5'- gGCgguggagaGCAGCGcgCGgguGAGCGUCUCg -3'
miRNA:   3'- aCGag------CGUCGUuaGCac-UUCGCAGGG- -5'
31008 5' -53.6 NC_006560.1 + 101555 0.67 0.940883
Target:  5'- aGCU-GCAgGCGGUUGUcGAGGCgGUCCg -3'
miRNA:   3'- aCGAgCGU-CGUUAGCA-CUUCG-CAGGg -5'
31008 5' -53.6 NC_006560.1 + 19393 0.67 0.940883
Target:  5'- cGCUCGCGGCAcgggccgggcgaGUCGccGcGGCGgcgCUCg -3'
miRNA:   3'- aCGAGCGUCGU------------UAGCa-CuUCGCa--GGG- -5'
31008 5' -53.6 NC_006560.1 + 93815 0.67 0.940883
Target:  5'- aGCUCGCGGCGc---UGAAGCucaacgCCCu -3'
miRNA:   3'- aCGAGCGUCGUuagcACUUCGca----GGG- -5'
31008 5' -53.6 NC_006560.1 + 26573 0.67 0.940883
Target:  5'- cGUgagCGCGGCGGcCG-GAAGCGaaCCCg -3'
miRNA:   3'- aCGa--GCGUCGUUaGCaCUUCGCa-GGG- -5'
31008 5' -53.6 NC_006560.1 + 51149 0.67 0.936518
Target:  5'- cUGcCUCGCGGCGcgCGaggccgccuuucuggGgcGCGUCCUc -3'
miRNA:   3'- -AC-GAGCGUCGUuaGCa--------------CuuCGCAGGG- -5'
31008 5' -53.6 NC_006560.1 + 69450 0.67 0.93602
Target:  5'- gGCcgCGgGGCuggCGgGggGCGUCCUg -3'
miRNA:   3'- aCGa-GCgUCGuuaGCaCuuCGCAGGG- -5'
31008 5' -53.6 NC_006560.1 + 115749 0.67 0.93602
Target:  5'- gGCggCGCAGCuGAUCcacccGAGGCG-CCCg -3'
miRNA:   3'- aCGa-GCGUCG-UUAGca---CUUCGCaGGG- -5'
31008 5' -53.6 NC_006560.1 + 133149 0.67 0.93602
Target:  5'- gGC-CGCGGCAGcgCGcGAAGUaGUCCUc -3'
miRNA:   3'- aCGaGCGUCGUUa-GCaCUUCG-CAGGG- -5'
31008 5' -53.6 NC_006560.1 + 146842 0.67 0.93602
Target:  5'- gUGCU-GCGGCGGcgCGgggcGggGCGgcgCCCg -3'
miRNA:   3'- -ACGAgCGUCGUUa-GCa---CuuCGCa--GGG- -5'
31008 5' -53.6 NC_006560.1 + 147935 0.67 0.93602
Target:  5'- gGCcCGCGGCcccCGgGAGGCGggCCCg -3'
miRNA:   3'- aCGaGCGUCGuuaGCaCUUCGCa-GGG- -5'
31008 5' -53.6 NC_006560.1 + 18621 0.67 0.93602
Target:  5'- gGCgCGCGGCucGUCGccguucGCGUCCCc -3'
miRNA:   3'- aCGaGCGUCGu-UAGCacuu--CGCAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.