miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31009 3' -55.6 NC_006560.1 + 112856 0.67 0.894042
Target:  5'- -cCCGGGGCCc-GAGCUCGgcGGCcaGGc -3'
miRNA:   3'- gaGGCCCCGGucUUUGAGC--UCGaaCC- -5'
31009 3' -55.6 NC_006560.1 + 112512 0.73 0.602755
Target:  5'- --gCGGGGCCuGGAGCUC-AGCgUGGg -3'
miRNA:   3'- gagGCCCCGGuCUUUGAGcUCGaACC- -5'
31009 3' -55.6 NC_006560.1 + 105669 0.7 0.734066
Target:  5'- -cCCGGGGCCuacuccguccGGGAGCUCGcGGCgacccaccUGGa -3'
miRNA:   3'- gaGGCCCCGG----------UCUUUGAGC-UCGa-------ACC- -5'
31009 3' -55.6 NC_006560.1 + 102649 0.66 0.931521
Target:  5'- -gCgGGGGCCgcccagaagucggggGGGAACUCGGGggUGa -3'
miRNA:   3'- gaGgCCCCGG---------------UCUUUGAGCUCgaACc -5'
31009 3' -55.6 NC_006560.1 + 87059 0.66 0.924151
Target:  5'- -gCCGGgccacGGCCGaGAGCUCGAGg-UGGg -3'
miRNA:   3'- gaGGCC-----CCGGUcUUUGAGCUCgaACC- -5'
31009 3' -55.6 NC_006560.1 + 85573 0.72 0.633367
Target:  5'- gCUCgGGGGCgGGggGCgcggCGGGCgcGGc -3'
miRNA:   3'- -GAGgCCCCGgUCuuUGa---GCUCGaaCC- -5'
31009 3' -55.6 NC_006560.1 + 83726 0.7 0.753437
Target:  5'- -gCCGGGGCCcgucccgacgcGGAGCUCGGGCcccucaUGGc -3'
miRNA:   3'- gaGGCCCCGGu----------CUUUGAGCUCGa-----ACC- -5'
31009 3' -55.6 NC_006560.1 + 81143 0.66 0.929463
Target:  5'- -cUCGGGGUgGaGGGugUCGGGCcggUGGa -3'
miRNA:   3'- gaGGCCCCGgU-CUUugAGCUCGa--ACC- -5'
31009 3' -55.6 NC_006560.1 + 78455 0.66 0.929463
Target:  5'- uCUCgGaGGGCUcGGAGCUgGAGCUg-- -3'
miRNA:   3'- -GAGgC-CCCGGuCUUUGAgCUCGAacc -5'
31009 3' -55.6 NC_006560.1 + 77263 0.71 0.678185
Target:  5'- -cCCGGGGCCccuGGAGCUgcgcgaggccaccagCGAGCU-GGa -3'
miRNA:   3'- gaGGCCCCGGu--CUUUGA---------------GCUCGAaCC- -5'
31009 3' -55.6 NC_006560.1 + 74710 0.68 0.825945
Target:  5'- gCUCCuGGGCCAGu-AC-CGGGCggcccUGGa -3'
miRNA:   3'- -GAGGcCCCGGUCuuUGaGCUCGa----ACC- -5'
31009 3' -55.6 NC_006560.1 + 74123 0.73 0.582443
Target:  5'- -gCCGcGGGCCAGggGCUCGucgcccGCaaGGa -3'
miRNA:   3'- gaGGC-CCCGGUCuuUGAGCu-----CGaaCC- -5'
31009 3' -55.6 NC_006560.1 + 73594 0.66 0.924151
Target:  5'- -cCCGGGGCgaGGAGGCcCGGGCc--- -3'
miRNA:   3'- gaGGCCCCGg-UCUUUGaGCUCGaacc -5'
31009 3' -55.6 NC_006560.1 + 67329 0.67 0.880383
Target:  5'- -cCCGGGGCgcucCGGAGAUcgCGGGCccgGGg -3'
miRNA:   3'- gaGGCCCCG----GUCUUUGa-GCUCGaa-CC- -5'
31009 3' -55.6 NC_006560.1 + 65044 0.67 0.865845
Target:  5'- --gCGGGGCCGGgcGCggGGGCagGGg -3'
miRNA:   3'- gagGCCCCGGUCuuUGagCUCGaaCC- -5'
31009 3' -55.6 NC_006560.1 + 58488 0.66 0.906789
Target:  5'- -cUCGGGGUCGGAAagccgaagaagaACUUGAGCg--- -3'
miRNA:   3'- gaGGCCCCGGUCUU------------UGAGCUCGaacc -5'
31009 3' -55.6 NC_006560.1 + 58424 0.66 0.911031
Target:  5'- gCUCCGGGGguCCAgcaggaacacggccGAGAC-CGAGUUcGGg -3'
miRNA:   3'- -GAGGCCCC--GGU--------------CUUUGaGCUCGAaCC- -5'
31009 3' -55.6 NC_006560.1 + 58292 0.67 0.894042
Target:  5'- uUCCGGGGCCuucuuGCgggCGGGCg--- -3'
miRNA:   3'- gAGGCCCCGGucuu-UGa--GCUCGaacc -5'
31009 3' -55.6 NC_006560.1 + 58219 0.68 0.834306
Target:  5'- gCUCCGGGcucGCCGGAgcGACggGGGCcgGGg -3'
miRNA:   3'- -GAGGCCC---CGGUCU--UUGagCUCGaaCC- -5'
31009 3' -55.6 NC_006560.1 + 55326 0.68 0.825945
Target:  5'- gUCgCGGGG-CGGggGCUCGuGGCggccgUGGu -3'
miRNA:   3'- gAG-GCCCCgGUCuuUGAGC-UCGa----ACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.