Results 41 - 60 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31009 | 3' | -55.6 | NC_006560.1 | + | 42069 | 0.68 | 0.834306 |
Target: 5'- cCUCCGcGGG-CGGggGCUCGuGCa--- -3' miRNA: 3'- -GAGGC-CCCgGUCuuUGAGCuCGaacc -5' |
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31009 | 3' | -55.6 | NC_006560.1 | + | 33778 | 0.68 | 0.834306 |
Target: 5'- cCUCgCGGGGCCGuGggGCgcgcgaagucgCGGGCgcGGa -3' miRNA: 3'- -GAG-GCCCCGGU-CuuUGa----------GCUCGaaCC- -5' |
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31009 | 3' | -55.6 | NC_006560.1 | + | 74710 | 0.68 | 0.825945 |
Target: 5'- gCUCCuGGGCCAGu-AC-CGGGCggcccUGGa -3' miRNA: 3'- -GAGGcCCCGGUCuuUGaGCUCGa----ACC- -5' |
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31009 | 3' | -55.6 | NC_006560.1 | + | 55326 | 0.68 | 0.825945 |
Target: 5'- gUCgCGGGG-CGGggGCUCGuGGCggccgUGGu -3' miRNA: 3'- gAG-GCCCCgGUCuuUGAGC-UCGa----ACC- -5' |
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31009 | 3' | -55.6 | NC_006560.1 | + | 54923 | 0.69 | 0.814816 |
Target: 5'- gCUCgGGGGCCGGGgcggccaucgucggGGCUCGcgcgccggcGGCggGGg -3' miRNA: 3'- -GAGgCCCCGGUCU--------------UUGAGC---------UCGaaCC- -5' |
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31009 | 3' | -55.6 | NC_006560.1 | + | 14811 | 0.69 | 0.808706 |
Target: 5'- gCUCgGGGGCCGGAGGgUC-AGCg--- -3' miRNA: 3'- -GAGgCCCCGGUCUUUgAGcUCGaacc -5' |
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31009 | 3' | -55.6 | NC_006560.1 | + | 146001 | 0.69 | 0.808706 |
Target: 5'- -aCCGGGGucauCCAGAGGCcgUGGGCggGGu -3' miRNA: 3'- gaGGCCCC----GGUCUUUGa-GCUCGaaCC- -5' |
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31009 | 3' | -55.6 | NC_006560.1 | + | 137092 | 0.69 | 0.799843 |
Target: 5'- -cCCGGGGCUGGAcGCggccaagCGGGCccGGg -3' miRNA: 3'- gaGGCCCCGGUCUuUGa------GCUCGaaCC- -5' |
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31009 | 3' | -55.6 | NC_006560.1 | + | 133520 | 0.69 | 0.799843 |
Target: 5'- -gCCGGGGUCGGcgGCUucgUGGGCggGGa -3' miRNA: 3'- gaGGCCCCGGUCuuUGA---GCUCGaaCC- -5' |
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31009 | 3' | -55.6 | NC_006560.1 | + | 45834 | 0.69 | 0.799843 |
Target: 5'- -aCCGGGGUCGuGAGGC-CGAGCg--- -3' miRNA: 3'- gaGGCCCCGGU-CUUUGaGCUCGaacc -5' |
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31009 | 3' | -55.6 | NC_006560.1 | + | 28193 | 0.69 | 0.772382 |
Target: 5'- gUCCcGGGCCGGcgGCcCGGGCggGGa -3' miRNA: 3'- gAGGcCCCGGUCuuUGaGCUCGaaCC- -5' |
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31009 | 3' | -55.6 | NC_006560.1 | + | 6539 | 0.7 | 0.753437 |
Target: 5'- cCUCgGGGGCUcggGGGGACggGGGCUcGGg -3' miRNA: 3'- -GAGgCCCCGG---UCUUUGagCUCGAaCC- -5' |
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31009 | 3' | -55.6 | NC_006560.1 | + | 6703 | 0.7 | 0.753437 |
Target: 5'- -aCCGGGgGCuCGGggGCUCGGGg--GGa -3' miRNA: 3'- gaGGCCC-CG-GUCuuUGAGCUCgaaCC- -5' |
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31009 | 3' | -55.6 | NC_006560.1 | + | 6803 | 0.7 | 0.753437 |
Target: 5'- -aCCGGGgGCuCGGggGCUCGGGg--GGa -3' miRNA: 3'- gaGGCCC-CG-GUCuuUGAGCUCgaaCC- -5' |
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31009 | 3' | -55.6 | NC_006560.1 | + | 83726 | 0.7 | 0.753437 |
Target: 5'- -gCCGGGGCCcgucccgacgcGGAGCUCGGGCcccucaUGGc -3' miRNA: 3'- gaGGCCCCGGu----------CUUUGAGCUCGa-----ACC- -5' |
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31009 | 3' | -55.6 | NC_006560.1 | + | 105669 | 0.7 | 0.734066 |
Target: 5'- -cCCGGGGCCuacuccguccGGGAGCUCGcGGCgacccaccUGGa -3' miRNA: 3'- gaGGCCCCGG----------UCUUUGAGC-UCGa-------ACC- -5' |
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31009 | 3' | -55.6 | NC_006560.1 | + | 147272 | 0.7 | 0.734066 |
Target: 5'- cCUCUGGcGGCC-GggGC-CGGGCggGGg -3' miRNA: 3'- -GAGGCC-CCGGuCuuUGaGCUCGaaCC- -5' |
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31009 | 3' | -55.6 | NC_006560.1 | + | 122779 | 0.7 | 0.734066 |
Target: 5'- -cCCGGGGCCcGGAGCUucggCGGGUccGGg -3' miRNA: 3'- gaGGCCCCGGuCUUUGA----GCUCGaaCC- -5' |
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31009 | 3' | -55.6 | NC_006560.1 | + | 142361 | 0.71 | 0.714343 |
Target: 5'- cCUCgGGGGCCGGggGCggCG-GCcuccgGGa -3' miRNA: 3'- -GAGgCCCCGGUCuuUGa-GCuCGaa---CC- -5' |
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31009 | 3' | -55.6 | NC_006560.1 | + | 39377 | 0.71 | 0.704372 |
Target: 5'- -cCCGGcGCCGGGAcccccgggccgaACUCGGGCUcGGg -3' miRNA: 3'- gaGGCCcCGGUCUU------------UGAGCUCGAaCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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