miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31009 3' -55.6 NC_006560.1 + 54381 0.67 0.900531
Target:  5'- -aCCGGGG--GGAAACgcgCGGGCggGGg -3'
miRNA:   3'- gaGGCCCCggUCUUUGa--GCUCGaaCC- -5'
31009 3' -55.6 NC_006560.1 + 15772 0.67 0.900531
Target:  5'- aCUCCGGGcCCGGggGC-CG-GCagGGc -3'
miRNA:   3'- -GAGGCCCcGGUCuuUGaGCuCGaaCC- -5'
31009 3' -55.6 NC_006560.1 + 148694 0.67 0.900531
Target:  5'- -cCCGGGGCCgccguccaauGGGAGCccCGAGCg--- -3'
miRNA:   3'- gaGGCCCCGG----------UCUUUGa-GCUCGaacc -5'
31009 3' -55.6 NC_006560.1 + 112856 0.67 0.894042
Target:  5'- -cCCGGGGCCc-GAGCUCGgcGGCcaGGc -3'
miRNA:   3'- gaGGCCCCGGucUUUGAGC--UCGaaCC- -5'
31009 3' -55.6 NC_006560.1 + 58292 0.67 0.894042
Target:  5'- uUCCGGGGCCuucuuGCgggCGGGCg--- -3'
miRNA:   3'- gAGGCCCCGGucuu-UGa--GCUCGaacc -5'
31009 3' -55.6 NC_006560.1 + 146894 0.67 0.894042
Target:  5'- -gCCuGGGCCAGGgccgccugGGCcCGGGCUUGa -3'
miRNA:   3'- gaGGcCCCGGUCU--------UUGaGCUCGAACc -5'
31009 3' -55.6 NC_006560.1 + 123949 0.67 0.894042
Target:  5'- -gCCGGaGGCCGGGGACgaggGAGCggcgccGGg -3'
miRNA:   3'- gaGGCC-CCGGUCUUUGag--CUCGaa----CC- -5'
31009 3' -55.6 NC_006560.1 + 34955 0.67 0.887325
Target:  5'- -cCCGGGGcCCGGgcGC-CGGGCUccgccGGg -3'
miRNA:   3'- gaGGCCCC-GGUCuuUGaGCUCGAa----CC- -5'
31009 3' -55.6 NC_006560.1 + 149994 0.67 0.887325
Target:  5'- -aCCGGGGCCGcgcucGGGACcgCGGGCg--- -3'
miRNA:   3'- gaGGCCCCGGU-----CUUUGa-GCUCGaacc -5'
31009 3' -55.6 NC_006560.1 + 41276 0.67 0.880383
Target:  5'- gCUCa-GGGCCAGGAACgucCGGGCg--- -3'
miRNA:   3'- -GAGgcCCCGGUCUUUGa--GCUCGaacc -5'
31009 3' -55.6 NC_006560.1 + 12328 0.67 0.880383
Target:  5'- -aUCGGGGaCCGGAGGCaccUCgGGGCUggcgGGg -3'
miRNA:   3'- gaGGCCCC-GGUCUUUG---AG-CUCGAa---CC- -5'
31009 3' -55.6 NC_006560.1 + 67329 0.67 0.880383
Target:  5'- -cCCGGGGCgcucCGGAGAUcgCGGGCccgGGg -3'
miRNA:   3'- gaGGCCCCG----GUCUUUGa-GCUCGaa-CC- -5'
31009 3' -55.6 NC_006560.1 + 38525 0.67 0.878258
Target:  5'- -cCCGGGGCCAcacccacggccgcguGCUCGAucucggucguccgguGCUUGGc -3'
miRNA:   3'- gaGGCCCCGGUcuu------------UGAGCU---------------CGAACC- -5'
31009 3' -55.6 NC_006560.1 + 37543 0.67 0.873222
Target:  5'- -gCgGGcGGCCAuGccGCUCGAGCUgaUGGa -3'
miRNA:   3'- gaGgCC-CCGGU-CuuUGAGCUCGA--ACC- -5'
31009 3' -55.6 NC_006560.1 + 65044 0.67 0.865845
Target:  5'- --gCGGGGCCGGgcGCggGGGCagGGg -3'
miRNA:   3'- gagGCCCCGGUCuuUGagCUCGaaCC- -5'
31009 3' -55.6 NC_006560.1 + 26389 0.68 0.858259
Target:  5'- -gCCGGGGCgCAGggGCgcgccccCGGGCg--- -3'
miRNA:   3'- gaGGCCCCG-GUCuuUGa------GCUCGaacc -5'
31009 3' -55.6 NC_006560.1 + 50690 0.68 0.858259
Target:  5'- -gCCaGGGCCAGGAGCU--GGCcUGGc -3'
miRNA:   3'- gaGGcCCCGGUCUUUGAgcUCGaACC- -5'
31009 3' -55.6 NC_006560.1 + 149763 0.68 0.842483
Target:  5'- -cCCGGGGCgCGGggGCgUCGAgGCg--- -3'
miRNA:   3'- gaGGCCCCG-GUCuuUG-AGCU-CGaacc -5'
31009 3' -55.6 NC_006560.1 + 1986 0.68 0.842483
Target:  5'- -cUCGGGGCCGGGccAGCUCcaGGGCggcGGc -3'
miRNA:   3'- gaGGCCCCGGUCU--UUGAG--CUCGaa-CC- -5'
31009 3' -55.6 NC_006560.1 + 42069 0.68 0.834306
Target:  5'- cCUCCGcGGG-CGGggGCUCGuGCa--- -3'
miRNA:   3'- -GAGGC-CCCgGUCuuUGAGCuCGaacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.