miRNA display CGI


Results 41 - 60 of 374 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31009 5' -61.2 NC_006560.1 + 120335 0.66 0.694233
Target:  5'- cCGUCGCCGAGG-CgUGCCCCUgcgUCAccccguGCa -3'
miRNA:   3'- -GCGGCGGUUUCaGgGCGGGGG---AGU------CG- -5'
31009 5' -61.2 NC_006560.1 + 147484 0.66 0.694233
Target:  5'- uCGUCGUCGGuGUCgUCGCUgUCCUCGGCg -3'
miRNA:   3'- -GCGGCGGUUuCAG-GGCGG-GGGAGUCG- -5'
31009 5' -61.2 NC_006560.1 + 149357 0.66 0.694233
Target:  5'- cCGCCGCgGGgaggagccGGgcggCgCCGCCCCCcgAGCg -3'
miRNA:   3'- -GCGGCGgUU--------UCa---G-GGCGGGGGagUCG- -5'
31009 5' -61.2 NC_006560.1 + 129927 0.66 0.685464
Target:  5'- gCGCgGCCGGAGgcgcgcagCCCGgCCCCgaccucguccucgaGGCg -3'
miRNA:   3'- -GCGgCGGUUUCa-------GGGCgGGGGag------------UCG- -5'
31009 5' -61.2 NC_006560.1 + 4951 0.66 0.684488
Target:  5'- aCGCCuccgaGCCGGGGUCCgaguccgaCGCCUCCg-AGCc -3'
miRNA:   3'- -GCGG-----CGGUUUCAGG--------GCGGGGGagUCG- -5'
31009 5' -61.2 NC_006560.1 + 106432 0.66 0.684488
Target:  5'- gGCCGCgGAggcGGUCgcgggcgaCCGCCggCUCUCGGCc -3'
miRNA:   3'- gCGGCGgUU---UCAG--------GGCGG--GGGAGUCG- -5'
31009 5' -61.2 NC_006560.1 + 79647 0.66 0.684488
Target:  5'- uCGCCaCCcgcaacGUCCggCGCCCCCcgcUCGGCg -3'
miRNA:   3'- -GCGGcGGuuu---CAGG--GCGGGGG---AGUCG- -5'
31009 5' -61.2 NC_006560.1 + 16412 0.66 0.684488
Target:  5'- aGCCGCgGugccgCCCGCCCgCgcCGGCu -3'
miRNA:   3'- gCGGCGgUuuca-GGGCGGGgGa-GUCG- -5'
31009 5' -61.2 NC_006560.1 + 3907 0.66 0.684488
Target:  5'- gCGgCGUCGgcGUCCC-CCUCCUCcGCc -3'
miRNA:   3'- -GCgGCGGUuuCAGGGcGGGGGAGuCG- -5'
31009 5' -61.2 NC_006560.1 + 105963 0.66 0.683511
Target:  5'- gGCCGCCGGAGaugaacgagccucUCgUGCUCCCg-GGCc -3'
miRNA:   3'- gCGGCGGUUUC-------------AGgGCGGGGGagUCG- -5'
31009 5' -61.2 NC_006560.1 + 134642 0.66 0.674702
Target:  5'- gGCgGCCAGAGgaccacgcaCUCGCCCCC-CcGCn -3'
miRNA:   3'- gCGgCGGUUUCa--------GGGCGGGGGaGuCG- -5'
31009 5' -61.2 NC_006560.1 + 43868 0.66 0.674702
Target:  5'- cCGgCGCCAGcggGGcCCCgcgacccaggGCCUCCUgCAGCg -3'
miRNA:   3'- -GCgGCGGUU---UCaGGG----------CGGGGGA-GUCG- -5'
31009 5' -61.2 NC_006560.1 + 79964 0.66 0.674702
Target:  5'- aGCC-CCGAGcgcccCCCGCCCCCcgaUAGCc -3'
miRNA:   3'- gCGGcGGUUUca---GGGCGGGGGa--GUCG- -5'
31009 5' -61.2 NC_006560.1 + 133962 0.66 0.674702
Target:  5'- gGUCGUCGGGGgccgcggcgCCC-CCCCC-CGGCu -3'
miRNA:   3'- gCGGCGGUUUCa--------GGGcGGGGGaGUCG- -5'
31009 5' -61.2 NC_006560.1 + 143155 0.66 0.674702
Target:  5'- gGCCGCCcc---CCCGCacacacauccCCCCUCuGCc -3'
miRNA:   3'- gCGGCGGuuucaGGGCG----------GGGGAGuCG- -5'
31009 5' -61.2 NC_006560.1 + 6853 0.66 0.674702
Target:  5'- gGCCucuGCCcg---CCCGCgCCCCUCcGCg -3'
miRNA:   3'- gCGG---CGGuuucaGGGCG-GGGGAGuCG- -5'
31009 5' -61.2 NC_006560.1 + 19379 0.66 0.674702
Target:  5'- aGCCGCCGGuuUCUCGCUCg--CGGCa -3'
miRNA:   3'- gCGGCGGUUucAGGGCGGGggaGUCG- -5'
31009 5' -61.2 NC_006560.1 + 27889 0.66 0.674702
Target:  5'- gGCCGCC-----UCCGCCCCCcCuuGCg -3'
miRNA:   3'- gCGGCGGuuucaGGGCGGGGGaGu-CG- -5'
31009 5' -61.2 NC_006560.1 + 45606 0.66 0.674702
Target:  5'- aCGauGUCGAug-CCCGCgUCCUCGGCg -3'
miRNA:   3'- -GCggCGGUUucaGGGCGgGGGAGUCG- -5'
31009 5' -61.2 NC_006560.1 + 145826 0.66 0.674702
Target:  5'- gGCCucgcgcggcggGCCGGGGg--CGCCCCCcUCGGCc -3'
miRNA:   3'- gCGG-----------CGGUUUCaggGCGGGGG-AGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.