miRNA display CGI


Results 21 - 40 of 374 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31009 5' -61.2 NC_006560.1 + 55872 0.66 0.703931
Target:  5'- gGCC-CCGAAGggCUCGCCUCC--AGCa -3'
miRNA:   3'- gCGGcGGUUUCa-GGGCGGGGGagUCG- -5'
31009 5' -61.2 NC_006560.1 + 25045 0.66 0.703931
Target:  5'- gCGCCGCCGA---CUCGCCCgCgcgcgaGGCg -3'
miRNA:   3'- -GCGGCGGUUucaGGGCGGGgGag----UCG- -5'
31009 5' -61.2 NC_006560.1 + 149887 0.66 0.703931
Target:  5'- gGCCGCgGAAGggcCCCGCgCgCCgaaggaaCGGCg -3'
miRNA:   3'- gCGGCGgUUUCa--GGGCGgG-GGa------GUCG- -5'
31009 5' -61.2 NC_006560.1 + 144543 0.66 0.703931
Target:  5'- gGCCGCCuuccccgcGGGcCCCuUCCCCUCgccGGCc -3'
miRNA:   3'- gCGGCGGu-------UUCaGGGcGGGGGAG---UCG- -5'
31009 5' -61.2 NC_006560.1 + 135640 0.66 0.703931
Target:  5'- aCGCCgGCCGA---CCUGCCCCUgCGGg -3'
miRNA:   3'- -GCGG-CGGUUucaGGGCGGGGGaGUCg -5'
31009 5' -61.2 NC_006560.1 + 135395 0.66 0.703931
Target:  5'- gGCCGCgGGGGUgUCGCUcggccaugaccaCCgUCGGCg -3'
miRNA:   3'- gCGGCGgUUUCAgGGCGG------------GGgAGUCG- -5'
31009 5' -61.2 NC_006560.1 + 79457 0.66 0.702963
Target:  5'- gCGgCGCguGAGcCCCcggcggcgcgugaGCCCCCcgCGGCg -3'
miRNA:   3'- -GCgGCGguUUCaGGG-------------CGGGGGa-GUCG- -5'
31009 5' -61.2 NC_006560.1 + 97742 0.66 0.700058
Target:  5'- cCGCgCGCCccGGgacgugcuacagCCGCCCCCuggUCAGCu -3'
miRNA:   3'- -GCG-GCGGuuUCag----------GGCGGGGG---AGUCG- -5'
31009 5' -61.2 NC_006560.1 + 148173 0.66 0.698118
Target:  5'- aGUCGgCGGAcaacacaccacacccGUCCCGCCUCuCUcCGGCg -3'
miRNA:   3'- gCGGCgGUUU---------------CAGGGCGGGG-GA-GUCG- -5'
31009 5' -61.2 NC_006560.1 + 114874 0.66 0.695205
Target:  5'- aCG-CGCgGGGGUCgCCGCUCCCgcauaaaaggcccggCGGCg -3'
miRNA:   3'- -GCgGCGgUUUCAG-GGCGGGGGa--------------GUCG- -5'
31009 5' -61.2 NC_006560.1 + 78716 0.66 0.694233
Target:  5'- uGCUGUgGGAGcggCCCGaCCCCCcCGGg -3'
miRNA:   3'- gCGGCGgUUUCa--GGGC-GGGGGaGUCg -5'
31009 5' -61.2 NC_006560.1 + 93641 0.66 0.694233
Target:  5'- aGCgCGCCAucggGGGUCgCCGCggCUUCGGCu -3'
miRNA:   3'- gCG-GCGGU----UUCAG-GGCGggGGAGUCG- -5'
31009 5' -61.2 NC_006560.1 + 99413 0.66 0.694233
Target:  5'- uGCUGCaagGAcGUCaCCGCCCCgacCAGCg -3'
miRNA:   3'- gCGGCGg--UUuCAG-GGCGGGGga-GUCG- -5'
31009 5' -61.2 NC_006560.1 + 130943 0.66 0.694233
Target:  5'- aCGCgGCCccgGGGGcCCUGCCCCCgaUCuucGCc -3'
miRNA:   3'- -GCGgCGG---UUUCaGGGCGGGGG--AGu--CG- -5'
31009 5' -61.2 NC_006560.1 + 144311 0.66 0.694233
Target:  5'- gCGCCcCCcucucCCCGCCCCuCUCcGCg -3'
miRNA:   3'- -GCGGcGGuuucaGGGCGGGG-GAGuCG- -5'
31009 5' -61.2 NC_006560.1 + 24301 0.66 0.694233
Target:  5'- cCGCCcgaGCCGGGcUCCgGCCgcgCCCUCGGg -3'
miRNA:   3'- -GCGG---CGGUUUcAGGgCGG---GGGAGUCg -5'
31009 5' -61.2 NC_006560.1 + 44857 0.66 0.694233
Target:  5'- uCGCCGCgcc--UCCCGCCCUCgccgcgccccCAGCc -3'
miRNA:   3'- -GCGGCGguuucAGGGCGGGGGa---------GUCG- -5'
31009 5' -61.2 NC_006560.1 + 89928 0.66 0.694233
Target:  5'- cCGCCGCCAGuucgGGUUCUcgGCCCacgcgCCgCGGCc -3'
miRNA:   3'- -GCGGCGGUU----UCAGGG--CGGG-----GGaGUCG- -5'
31009 5' -61.2 NC_006560.1 + 120335 0.66 0.694233
Target:  5'- cCGUCGCCGAGG-CgUGCCCCUgcgUCAccccguGCa -3'
miRNA:   3'- -GCGGCGGUUUCaGgGCGGGGG---AGU------CG- -5'
31009 5' -61.2 NC_006560.1 + 147484 0.66 0.694233
Target:  5'- uCGUCGUCGGuGUCgUCGCUgUCCUCGGCg -3'
miRNA:   3'- -GCGGCGGUUuCAG-GGCGG-GGGAGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.