miRNA display CGI


Results 21 - 40 of 374 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31009 5' -61.2 NC_006560.1 + 858 0.76 0.187054
Target:  5'- gCGcCCGCCcacGGccCCCGCCCCCUCGcGCg -3'
miRNA:   3'- -GC-GGCGGuu-UCa-GGGCGGGGGAGU-CG- -5'
31009 5' -61.2 NC_006560.1 + 103065 0.76 0.188868
Target:  5'- gGCCGCCGguuccgcggggacggGgggaccGGUCCCGCCCCCgcggaccCGGCg -3'
miRNA:   3'- gCGGCGGU---------------U------UCAGGGCGGGGGa------GUCG- -5'
31009 5' -61.2 NC_006560.1 + 134235 0.76 0.19162
Target:  5'- cCGCCGCgc-GG-CCCGCCCCCgCGGCc -3'
miRNA:   3'- -GCGGCGguuUCaGGGCGGGGGaGUCG- -5'
31009 5' -61.2 NC_006560.1 + 50181 0.76 0.196283
Target:  5'- cCGCCGUCGGGcGUCCacggccccggaCGCCCCCgggCGGCg -3'
miRNA:   3'- -GCGGCGGUUU-CAGG-----------GCGGGGGa--GUCG- -5'
31009 5' -61.2 NC_006560.1 + 58251 0.76 0.196283
Target:  5'- gGCCGCCGAGGcgagCCGCCggCCUCGGCg -3'
miRNA:   3'- gCGGCGGUUUCag--GGCGGg-GGAGUCG- -5'
31009 5' -61.2 NC_006560.1 + 144827 0.76 0.205908
Target:  5'- cCGCgGCCuccccGGGcCCUGCCCCCUCuGCc -3'
miRNA:   3'- -GCGgCGGu----UUCaGGGCGGGGGAGuCG- -5'
31009 5' -61.2 NC_006560.1 + 86160 0.76 0.210872
Target:  5'- gCGCCGCCAugcGGUCgcccauggCCGUcagCCCCUCGGCc -3'
miRNA:   3'- -GCGGCGGUu--UCAG--------GGCG---GGGGAGUCG- -5'
31009 5' -61.2 NC_006560.1 + 104451 0.75 0.215939
Target:  5'- cCGCCGUCGA-GUCCCGCCggCCCg-AGCg -3'
miRNA:   3'- -GCGGCGGUUuCAGGGCGG--GGGagUCG- -5'
31009 5' -61.2 NC_006560.1 + 18047 0.75 0.215939
Target:  5'- cCGCCGggacCCAAGGUCCCGCCguguUUCUCGGUc -3'
miRNA:   3'- -GCGGC----GGUUUCAGGGCGG----GGGAGUCG- -5'
31009 5' -61.2 NC_006560.1 + 86851 0.75 0.231224
Target:  5'- gCGCCGUCGgcGUcguccccguccucCCCGCCCCCgcCGGCg -3'
miRNA:   3'- -GCGGCGGUuuCA-------------GGGCGGGGGa-GUCG- -5'
31009 5' -61.2 NC_006560.1 + 131132 0.75 0.231767
Target:  5'- cCGCgGCCGGGGcgcgcgcgCUCGCCCCCgcgCGGCu -3'
miRNA:   3'- -GCGgCGGUUUCa-------GGGCGGGGGa--GUCG- -5'
31009 5' -61.2 NC_006560.1 + 150498 0.75 0.231767
Target:  5'- cCGCC-CCGcGGUCCCGgCCCCgcCGGCg -3'
miRNA:   3'- -GCGGcGGUuUCAGGGCgGGGGa-GUCG- -5'
31009 5' -61.2 NC_006560.1 + 18496 0.75 0.231767
Target:  5'- aCGCCGCCGccuGcUUCCGCgCCCUCuGCg -3'
miRNA:   3'- -GCGGCGGUuu-C-AGGGCGgGGGAGuCG- -5'
31009 5' -61.2 NC_006560.1 + 169 0.75 0.231767
Target:  5'- cCGCC-CCGcGGUCCCGgCCCCgcCGGCg -3'
miRNA:   3'- -GCGGcGGUuUCAGGGCgGGGGa-GUCG- -5'
31009 5' -61.2 NC_006560.1 + 42635 0.75 0.237257
Target:  5'- uCGCgCGCCAGGGcggcgaacgCCUGCCCCCggGGCg -3'
miRNA:   3'- -GCG-GCGGUUUCa--------GGGCGGGGGagUCG- -5'
31009 5' -61.2 NC_006560.1 + 100042 0.75 0.237257
Target:  5'- gGCuCGCC-GGGcCCCGCCCCCcaCAGCc -3'
miRNA:   3'- gCG-GCGGuUUCaGGGCGGGGGa-GUCG- -5'
31009 5' -61.2 NC_006560.1 + 42105 0.75 0.242855
Target:  5'- aCGCCGCCuccucGUCgaCGCCCCCggacgcCAGCg -3'
miRNA:   3'- -GCGGCGGuuu--CAGg-GCGGGGGa-----GUCG- -5'
31009 5' -61.2 NC_006560.1 + 117923 0.75 0.242855
Target:  5'- aCGCCGCCGAcGgCCCGCgCCUggcgCGGCu -3'
miRNA:   3'- -GCGGCGGUUuCaGGGCGgGGGa---GUCG- -5'
31009 5' -61.2 NC_006560.1 + 23600 0.74 0.248562
Target:  5'- gCGCgCGCCGcGGUCCCGCCgCg-CGGCg -3'
miRNA:   3'- -GCG-GCGGUuUCAGGGCGGgGgaGUCG- -5'
31009 5' -61.2 NC_006560.1 + 19814 0.74 0.248562
Target:  5'- gCGCCGCCuga---CCGCCCCCcaccugCAGCa -3'
miRNA:   3'- -GCGGCGGuuucagGGCGGGGGa-----GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.