miRNA display CGI


Results 1 - 20 of 374 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31009 5' -61.2 NC_006560.1 + 121536 1.1 0.000801
Target:  5'- uCGCCGCCAAAGUCCCGCCCCCUCAGCu -3'
miRNA:   3'- -GCGGCGGUUUCAGGGCGGGGGAGUCG- -5'
31009 5' -61.2 NC_006560.1 + 64954 0.83 0.064892
Target:  5'- uCGCCGCCGGcGGcCUCGuCCCCCUCGGCg -3'
miRNA:   3'- -GCGGCGGUU-UCaGGGC-GGGGGAGUCG- -5'
31009 5' -61.2 NC_006560.1 + 22203 0.81 0.088426
Target:  5'- cCGUCGCCGcGG-CCCGCCCCCgCGGCc -3'
miRNA:   3'- -GCGGCGGUuUCaGGGCGGGGGaGUCG- -5'
31009 5' -61.2 NC_006560.1 + 56083 0.81 0.090718
Target:  5'- gCGCC-CCGGGG-CCCGCCCCCUCcGCc -3'
miRNA:   3'- -GCGGcGGUUUCaGGGCGGGGGAGuCG- -5'
31009 5' -61.2 NC_006560.1 + 17525 0.8 0.103051
Target:  5'- gCGCCGCCGucGUCgucguCCGCCCCCUCGu- -3'
miRNA:   3'- -GCGGCGGUuuCAG-----GGCGGGGGAGUcg -5'
31009 5' -61.2 NC_006560.1 + 26280 0.8 0.112322
Target:  5'- gCGCCGCCGGGGagccuggcgggcggcUUCUGCCCCgUCGGCg -3'
miRNA:   3'- -GCGGCGGUUUC---------------AGGGCGGGGgAGUCG- -5'
31009 5' -61.2 NC_006560.1 + 23436 0.8 0.114037
Target:  5'- uCGCCGCCGAccgcGG-CgCCGCCCCCgCGGCg -3'
miRNA:   3'- -GCGGCGGUU----UCaG-GGCGGGGGaGUCG- -5'
31009 5' -61.2 NC_006560.1 + 123705 0.8 0.11695
Target:  5'- cCGCCGCCAccuacgcAGcCCCGCCCUC-CAGCg -3'
miRNA:   3'- -GCGGCGGUu------UCaGGGCGGGGGaGUCG- -5'
31009 5' -61.2 NC_006560.1 + 28731 0.79 0.12738
Target:  5'- gCGCCGCCGguuggucgcgccaccGcGUCCCGCCCCgUCGGg -3'
miRNA:   3'- -GCGGCGGU---------------UuCAGGGCGGGGgAGUCg -5'
31009 5' -61.2 NC_006560.1 + 10263 0.79 0.129307
Target:  5'- gGCCccgGCCucGGcUCCCGCCCCCUCcGCg -3'
miRNA:   3'- gCGG---CGGuuUC-AGGGCGGGGGAGuCG- -5'
31009 5' -61.2 NC_006560.1 + 105598 0.78 0.142862
Target:  5'- gCGCCGCCccGGAGg-CCGCCCCC-CGGCc -3'
miRNA:   3'- -GCGGCGG--UUUCagGGCGGGGGaGUCG- -5'
31009 5' -61.2 NC_006560.1 + 1299 0.78 0.146448
Target:  5'- gGCCGCCcGGGUUCCGCCCgCaCGGCu -3'
miRNA:   3'- gCGGCGGuUUCAGGGCGGGgGaGUCG- -5'
31009 5' -61.2 NC_006560.1 + 77003 0.78 0.150116
Target:  5'- gCGCuCGCCGGGGaCCUGCCCCCgUgGGCg -3'
miRNA:   3'- -GCG-GCGGUUUCaGGGCGGGGG-AgUCG- -5'
31009 5' -61.2 NC_006560.1 + 124494 0.78 0.153868
Target:  5'- cCGCCGCCGAcc-CCCGgCCCCUCAugGCg -3'
miRNA:   3'- -GCGGCGGUUucaGGGCgGGGGAGU--CG- -5'
31009 5' -61.2 NC_006560.1 + 102419 0.78 0.157704
Target:  5'- gCGCgGCCGcGGcgUCCGCCUCCUCGGCc -3'
miRNA:   3'- -GCGgCGGUuUCa-GGGCGGGGGAGUCG- -5'
31009 5' -61.2 NC_006560.1 + 34000 0.77 0.165637
Target:  5'- cCGCucuCGCCuccGUCCCGCCCCCUCcccuGCc -3'
miRNA:   3'- -GCG---GCGGuuuCAGGGCGGGGGAGu---CG- -5'
31009 5' -61.2 NC_006560.1 + 83592 0.77 0.173927
Target:  5'- cCGCCgucugggaGCCGGGGcCCCGCCUCCgcgCGGCg -3'
miRNA:   3'- -GCGG--------CGGUUUCaGGGCGGGGGa--GUCG- -5'
31009 5' -61.2 NC_006560.1 + 48176 0.77 0.178208
Target:  5'- cCGCCGCCGcccGUCCCcauCCCCC-CGGCg -3'
miRNA:   3'- -GCGGCGGUuu-CAGGGc--GGGGGaGUCG- -5'
31009 5' -61.2 NC_006560.1 + 96087 0.77 0.182584
Target:  5'- cCGCgGCCGGAcGagCCGCCCCCgCGGCg -3'
miRNA:   3'- -GCGgCGGUUU-CagGGCGGGGGaGUCG- -5'
31009 5' -61.2 NC_006560.1 + 120086 0.77 0.182584
Target:  5'- uGcCCGCgGAGGUCCCcggggaCCCCUCGGCg -3'
miRNA:   3'- gC-GGCGgUUUCAGGGcg----GGGGAGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.