miRNA display CGI


Results 1 - 20 of 374 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31009 5' -61.2 NC_006560.1 + 93 0.71 0.394716
Target:  5'- gCGCC-CCGc-GcCCCGCCCCCgCGGCc -3'
miRNA:   3'- -GCGGcGGUuuCaGGGCGGGGGaGUCG- -5'
31009 5' -61.2 NC_006560.1 + 169 0.75 0.231767
Target:  5'- cCGCC-CCGcGGUCCCGgCCCCgcCGGCg -3'
miRNA:   3'- -GCGGcGGUuUCAGGGCgGGGGa-GUCG- -5'
31009 5' -61.2 NC_006560.1 + 215 0.72 0.333063
Target:  5'- cCGCCGCgGGAGggCCCGgCCCgcggCUCGGUg -3'
miRNA:   3'- -GCGGCGgUUUCa-GGGCgGGG----GAGUCG- -5'
31009 5' -61.2 NC_006560.1 + 320 0.69 0.528048
Target:  5'- -cCCGUgAAGGcCCCgGCCCCCUCucGCc -3'
miRNA:   3'- gcGGCGgUUUCaGGG-CGGGGGAGu-CG- -5'
31009 5' -61.2 NC_006560.1 + 468 0.73 0.311836
Target:  5'- gGCgGCCAGucacccccGUCCCgGCCCCCgUCGGUc -3'
miRNA:   3'- gCGgCGGUUu-------CAGGG-CGGGGG-AGUCG- -5'
31009 5' -61.2 NC_006560.1 + 536 0.68 0.560717
Target:  5'- gGCCgGCCGcgccccGGGUCCCcggcgucccccgcgcGCCCCgUCGGUc -3'
miRNA:   3'- gCGG-CGGU------UUCAGGG---------------CGGGGgAGUCG- -5'
31009 5' -61.2 NC_006560.1 + 692 0.67 0.595881
Target:  5'- uCGUCGCgGGccccGUCCC-CCCCCgCGGCc -3'
miRNA:   3'- -GCGGCGgUUu---CAGGGcGGGGGaGUCG- -5'
31009 5' -61.2 NC_006560.1 + 749 0.71 0.394716
Target:  5'- cCGCgGCCcc-GUCCCcCCCCCccgCGGCg -3'
miRNA:   3'- -GCGgCGGuuuCAGGGcGGGGGa--GUCG- -5'
31009 5' -61.2 NC_006560.1 + 858 0.76 0.187054
Target:  5'- gCGcCCGCCcacGGccCCCGCCCCCUCGcGCg -3'
miRNA:   3'- -GC-GGCGGuu-UCa-GGGCGGGGGAGU-CG- -5'
31009 5' -61.2 NC_006560.1 + 905 0.67 0.615573
Target:  5'- gGCCGCCGG----CCGCUCCCggCGGUg -3'
miRNA:   3'- gCGGCGGUUucagGGCGGGGGa-GUCG- -5'
31009 5' -61.2 NC_006560.1 + 1012 0.67 0.635312
Target:  5'- gCGCCGUCuccGcCCCGCCgUCUCcGCc -3'
miRNA:   3'- -GCGGCGGuuuCaGGGCGGgGGAGuCG- -5'
31009 5' -61.2 NC_006560.1 + 1071 0.69 0.481386
Target:  5'- gGCCGCCGAcgGGgcagaagccgCCCGCCaggcuCCC-CGGCg -3'
miRNA:   3'- gCGGCGGUU--UCa---------GGGCGG-----GGGaGUCG- -5'
31009 5' -61.2 NC_006560.1 + 1299 0.78 0.146448
Target:  5'- gGCCGCCcGGGUUCCGCCCgCaCGGCu -3'
miRNA:   3'- gCGGCGGuUUCAGGGCGGGgGaGUCG- -5'
31009 5' -61.2 NC_006560.1 + 1404 0.67 0.645181
Target:  5'- uCGCCccCCGcGGcCCuCGCCCCCcgCGGCc -3'
miRNA:   3'- -GCGGc-GGUuUCaGG-GCGGGGGa-GUCG- -5'
31009 5' -61.2 NC_006560.1 + 1935 0.73 0.311146
Target:  5'- uCGCCGUCcGGGUCCCaguccggggucgcGCCCCC-CAGg -3'
miRNA:   3'- -GCGGCGGuUUCAGGG-------------CGGGGGaGUCg -5'
31009 5' -61.2 NC_006560.1 + 2942 0.69 0.509162
Target:  5'- aCGCCGCCGAGcUCCuCGCCggg-CAGCg -3'
miRNA:   3'- -GCGGCGGUUUcAGG-GCGGgggaGUCG- -5'
31009 5' -61.2 NC_006560.1 + 3277 0.67 0.605718
Target:  5'- cCGCCGCgGGGGUCggGCCCgCCg-GGCg -3'
miRNA:   3'- -GCGGCGgUUUCAGggCGGG-GGagUCG- -5'
31009 5' -61.2 NC_006560.1 + 3826 0.73 0.311836
Target:  5'- uCGCCGCCGAAGcCCucgacgagCGCCUCCaugaCGGCg -3'
miRNA:   3'- -GCGGCGGUUUCaGG--------GCGGGGGa---GUCG- -5'
31009 5' -61.2 NC_006560.1 + 3907 0.66 0.684488
Target:  5'- gCGgCGUCGgcGUCCC-CCUCCUCcGCc -3'
miRNA:   3'- -GCgGCGGUuuCAGGGcGGGGGAGuCG- -5'
31009 5' -61.2 NC_006560.1 + 4525 0.67 0.595881
Target:  5'- gGCCGCCGuaGAGcaCgCGCCCCgggggcgggggCUCGGCc -3'
miRNA:   3'- gCGGCGGU--UUCa-GgGCGGGG-----------GAGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.