miRNA display CGI


Results 1 - 20 of 374 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31009 5' -61.2 NC_006560.1 + 150498 0.75 0.231767
Target:  5'- cCGCC-CCGcGGUCCCGgCCCCgcCGGCg -3'
miRNA:   3'- -GCGGcGGUuUCAGGGCgGGGGa-GUCG- -5'
31009 5' -61.2 NC_006560.1 + 150422 0.71 0.394716
Target:  5'- gCGCC-CCGc-GcCCCGCCCCCgCGGCc -3'
miRNA:   3'- -GCGGcGGUuuCaGGGCGGGGGaGUCG- -5'
31009 5' -61.2 NC_006560.1 + 150309 0.73 0.311836
Target:  5'- cCGCCGCgGGAGggCCCgGCCCCC-CGcGCc -3'
miRNA:   3'- -GCGGCGgUUUCa-GGG-CGGGGGaGU-CG- -5'
31009 5' -61.2 NC_006560.1 + 150226 0.68 0.536632
Target:  5'- aCGCUGCCGGgcgugcuGGUugCCCGCgCUCUCGGg -3'
miRNA:   3'- -GCGGCGGUU-------UCA--GGGCGgGGGAGUCg -5'
31009 5' -61.2 NC_006560.1 + 149887 0.66 0.703931
Target:  5'- gGCCGCgGAAGggcCCCGCgCgCCgaaggaaCGGCg -3'
miRNA:   3'- gCGGCGgUUUCa--GGGCGgG-GGa------GUCG- -5'
31009 5' -61.2 NC_006560.1 + 149357 0.66 0.694233
Target:  5'- cCGCCGCgGGgaggagccGGgcggCgCCGCCCCCcgAGCg -3'
miRNA:   3'- -GCGGCGgUU--------UCa---G-GGCGGGGGagUCG- -5'
31009 5' -61.2 NC_006560.1 + 149267 0.68 0.576287
Target:  5'- -uCCGCCGGGcgCCU-CCCCCUCGGCc -3'
miRNA:   3'- gcGGCGGUUUcaGGGcGGGGGAGUCG- -5'
31009 5' -61.2 NC_006560.1 + 148699 0.67 0.615573
Target:  5'- gGCCGCCGuccaauggGAGcCCCGagcggcgUCCCaUCAGCa -3'
miRNA:   3'- gCGGCGGU--------UUCaGGGCg------GGGG-AGUCG- -5'
31009 5' -61.2 NC_006560.1 + 148173 0.66 0.698118
Target:  5'- aGUCGgCGGAcaacacaccacacccGUCCCGCCUCuCUcCGGCg -3'
miRNA:   3'- gCGGCgGUUU---------------CAGGGCGGGG-GA-GUCG- -5'
31009 5' -61.2 NC_006560.1 + 147665 0.7 0.454366
Target:  5'- uGCCGgCGcgca-CCGCCUCCUCGGCc -3'
miRNA:   3'- gCGGCgGUuucagGGCGGGGGAGUCG- -5'
31009 5' -61.2 NC_006560.1 + 147484 0.66 0.694233
Target:  5'- uCGUCGUCGGuGUCgUCGCUgUCCUCGGCg -3'
miRNA:   3'- -GCGGCGGUUuCAG-GGCGG-GGGAGUCG- -5'
31009 5' -61.2 NC_006560.1 + 147452 0.67 0.595881
Target:  5'- cCGCgGCC----UCCCGCCaCCCacCGGCg -3'
miRNA:   3'- -GCGgCGGuuucAGGGCGG-GGGa-GUCG- -5'
31009 5' -61.2 NC_006560.1 + 147155 0.67 0.629389
Target:  5'- gCGCCGCCucGGGgcgccucccucccucUcccCCCGCCCCCUCc-- -3'
miRNA:   3'- -GCGGCGGu-UUC---------------A---GGGCGGGGGAGucg -5'
31009 5' -61.2 NC_006560.1 + 146558 0.66 0.713571
Target:  5'- gGcCCGCUuGGGUCCCcgcgagccggagGCgCCCC-CGGCg -3'
miRNA:   3'- gC-GGCGGuUUCAGGG------------CG-GGGGaGUCG- -5'
31009 5' -61.2 NC_006560.1 + 145826 0.66 0.674702
Target:  5'- gGCCucgcgcggcggGCCGGGGg--CGCCCCCcUCGGCc -3'
miRNA:   3'- gCGG-----------CGGUUUCaggGCGGGGG-AGUCG- -5'
31009 5' -61.2 NC_006560.1 + 145623 0.7 0.454366
Target:  5'- uGCCGCCcccg-CCCGCCCUg-CGGCc -3'
miRNA:   3'- gCGGCGGuuucaGGGCGGGGgaGUCG- -5'
31009 5' -61.2 NC_006560.1 + 145545 0.71 0.402925
Target:  5'- uCGgCGCCGGGGacgCCCGgCCCCgccCGGCc -3'
miRNA:   3'- -GCgGCGGUUUCa--GGGCgGGGGa--GUCG- -5'
31009 5' -61.2 NC_006560.1 + 145464 0.67 0.62544
Target:  5'- uGUCcCCGGGGggggCuCCGCCCCCUguGUc -3'
miRNA:   3'- gCGGcGGUUUCa---G-GGCGGGGGAguCG- -5'
31009 5' -61.2 NC_006560.1 + 145272 0.68 0.547188
Target:  5'- aGCC-CCGGcccCCCgGCCCCCUgGGCg -3'
miRNA:   3'- gCGGcGGUUucaGGG-CGGGGGAgUCG- -5'
31009 5' -61.2 NC_006560.1 + 145233 0.7 0.445543
Target:  5'- gCGCC-CCGGGGgagCCCGCagCCCC-CGGCc -3'
miRNA:   3'- -GCGGcGGUUUCa--GGGCG--GGGGaGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.