miRNA display CGI


Results 21 - 40 of 374 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31009 5' -61.2 NC_006560.1 + 4951 0.66 0.684488
Target:  5'- aCGCCuccgaGCCGGGGUCCgaguccgaCGCCUCCg-AGCc -3'
miRNA:   3'- -GCGG-----CGGUUUCAGG--------GCGGGGGagUCG- -5'
31009 5' -61.2 NC_006560.1 + 5018 0.72 0.333063
Target:  5'- uCGCCGCCGucGUCCUccuCCCCCgccgCgAGCu -3'
miRNA:   3'- -GCGGCGGUuuCAGGGc--GGGGGa---G-UCG- -5'
31009 5' -61.2 NC_006560.1 + 5327 0.72 0.370748
Target:  5'- gGCgGCCccuccGGGUCCgGCgUCCUCGGCg -3'
miRNA:   3'- gCGgCGGu----UUCAGGgCGgGGGAGUCG- -5'
31009 5' -61.2 NC_006560.1 + 6113 0.68 0.547188
Target:  5'- cCGCCGCCGcccUCaCCGCgCCUgcgCGGCg -3'
miRNA:   3'- -GCGGCGGUuucAG-GGCGgGGGa--GUCG- -5'
31009 5' -61.2 NC_006560.1 + 6333 0.67 0.605718
Target:  5'- aCGCCGCgCGGGcGcCCCGCCCCggcccgcccUUCGGg -3'
miRNA:   3'- -GCGGCG-GUUU-CaGGGCGGGG---------GAGUCg -5'
31009 5' -61.2 NC_006560.1 + 6446 0.72 0.362983
Target:  5'- uCGCCGCCGccG-CCgGCCCuCCUC-GCu -3'
miRNA:   3'- -GCGGCGGUuuCaGGgCGGG-GGAGuCG- -5'
31009 5' -61.2 NC_006560.1 + 6853 0.66 0.674702
Target:  5'- gGCCucuGCCcg---CCCGCgCCCCUCcGCg -3'
miRNA:   3'- gCGG---CGGuuucaGGGCG-GGGGAGuCG- -5'
31009 5' -61.2 NC_006560.1 + 7269 0.69 0.518571
Target:  5'- gCGCCGCCGAccccGGaCCUGCCgCCggCuGCg -3'
miRNA:   3'- -GCGGCGGUU----UCaGGGCGGgGGa-GuCG- -5'
31009 5' -61.2 NC_006560.1 + 7355 0.66 0.694233
Target:  5'- uCGCgCGCCccucgcGAGcCCCGaCCCCUUCgagAGCc -3'
miRNA:   3'- -GCG-GCGGu-----UUCaGGGC-GGGGGAG---UCG- -5'
31009 5' -61.2 NC_006560.1 + 7644 0.67 0.595881
Target:  5'- gGCCGUCGGGGcgaCCGUcgCCCCUCugGGCc -3'
miRNA:   3'- gCGGCGGUUUCag-GGCG--GGGGAG--UCG- -5'
31009 5' -61.2 NC_006560.1 + 10263 0.79 0.129307
Target:  5'- gGCCccgGCCucGGcUCCCGCCCCCUCcGCg -3'
miRNA:   3'- gCGG---CGGuuUC-AGGGCGGGGGAGuCG- -5'
31009 5' -61.2 NC_006560.1 + 10304 0.69 0.518571
Target:  5'- gGCCGCCGGGGa-CCGCCgCCgcgacccgCGGCc -3'
miRNA:   3'- gCGGCGGUUUCagGGCGGgGGa-------GUCG- -5'
31009 5' -61.2 NC_006560.1 + 10475 0.7 0.463283
Target:  5'- aCGCCGCCucGGggCCCggggcggggGCCCCgUCGGg -3'
miRNA:   3'- -GCGGCGGuuUCa-GGG---------CGGGGgAGUCg -5'
31009 5' -61.2 NC_006560.1 + 10781 0.67 0.635312
Target:  5'- aCGCCGCCAgGAGccCCCGCggggCCCg-GGCg -3'
miRNA:   3'- -GCGGCGGU-UUCa-GGGCGg---GGGagUCG- -5'
31009 5' -61.2 NC_006560.1 + 10921 0.71 0.402925
Target:  5'- cCGCCGCCGgcGgcgCCUuaaaugGCCCCCgcgcCAGCc -3'
miRNA:   3'- -GCGGCGGUuuCa--GGG------CGGGGGa---GUCG- -5'
31009 5' -61.2 NC_006560.1 + 10965 0.69 0.518571
Target:  5'- aCGCCGCgc--GUUCCGCCCCC-C-GCc -3'
miRNA:   3'- -GCGGCGguuuCAGGGCGGGGGaGuCG- -5'
31009 5' -61.2 NC_006560.1 + 10995 0.67 0.62544
Target:  5'- aCGCCGUuCGGccaCCaCGCCCCCUCccccGGCg -3'
miRNA:   3'- -GCGGCG-GUUucaGG-GCGGGGGAG----UCG- -5'
31009 5' -61.2 NC_006560.1 + 11835 0.68 0.580196
Target:  5'- aCGCCGCCAGgcccagGGgaaacaggcuggcguUCgUCGCCCCCUCGa- -3'
miRNA:   3'- -GCGGCGGUU------UC---------------AG-GGCGGGGGAGUcg -5'
31009 5' -61.2 NC_006560.1 + 12558 0.68 0.537589
Target:  5'- gCGCCGUCGGGGUCUCGUCgag-CAGCu -3'
miRNA:   3'- -GCGGCGGUUUCAGGGCGGgggaGUCG- -5'
31009 5' -61.2 NC_006560.1 + 13634 0.7 0.42819
Target:  5'- cCGCCGCCAcguAGgcgccCCCGCCCgCCgagacgCAcGCg -3'
miRNA:   3'- -GCGGCGGUu--UCa----GGGCGGG-GGa-----GU-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.