miRNA display CGI


Results 41 - 60 of 301 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31010 5' -61.6 NC_006560.1 + 146282 0.66 0.656874
Target:  5'- -gGGGCCGGaCgCCGCggGGGCGcggucGGCGUCc -3'
miRNA:   3'- ggCUUGGUC-GgGGCG--UCCGU-----CCGCAG- -5'
31010 5' -61.6 NC_006560.1 + 662 0.66 0.656874
Target:  5'- uUCGcaccCCGGCgcgCCCGCGGcGCGGGCucGUCg -3'
miRNA:   3'- -GGCuu--GGUCG---GGGCGUC-CGUCCG--CAG- -5'
31010 5' -61.6 NC_006560.1 + 117753 0.66 0.656874
Target:  5'- gCGAGcCCAGCCCgGgGGGCuguuCGUCu -3'
miRNA:   3'- gGCUU-GGUCGGGgCgUCCGucc-GCAG- -5'
31010 5' -61.6 NC_006560.1 + 119110 0.66 0.656874
Target:  5'- gCGAGCgGGCCuuCCGCGGGCGccGGU-UCg -3'
miRNA:   3'- gGCUUGgUCGG--GGCGUCCGU--CCGcAG- -5'
31010 5' -61.6 NC_006560.1 + 134689 0.66 0.656874
Target:  5'- gCGGACCcGCCacucgCCGC-GGCGGGgGUg -3'
miRNA:   3'- gGCUUGGuCGG-----GGCGuCCGUCCgCAg -5'
31010 5' -61.6 NC_006560.1 + 42372 0.66 0.653921
Target:  5'- aCgGAAUCGGCuCCCGCAGGgccacgucCAGGUccagcacgacguucGUCa -3'
miRNA:   3'- -GgCUUGGUCG-GGGCGUCC--------GUCCG--------------CAG- -5'
31010 5' -61.6 NC_006560.1 + 41664 0.66 0.647024
Target:  5'- cCCGcguCCGguGCCgUCGCGGGCGGcGCGUg -3'
miRNA:   3'- -GGCuu-GGU--CGG-GGCGUCCGUC-CGCAg -5'
31010 5' -61.6 NC_006560.1 + 81354 0.66 0.647024
Target:  5'- aCGAgGCCggcGGCCaCCaGCAGcGCGGGCGg- -3'
miRNA:   3'- gGCU-UGG---UCGG-GG-CGUC-CGUCCGCag -5'
31010 5' -61.6 NC_006560.1 + 71597 0.66 0.647024
Target:  5'- gCGGGCCuccgcgauGCCCUGUcGGCcgAGGcCGUCg -3'
miRNA:   3'- gGCUUGGu-------CGGGGCGuCCG--UCC-GCAG- -5'
31010 5' -61.6 NC_006560.1 + 54750 0.66 0.647024
Target:  5'- gCCac-CCGGCCCCGCAgGGCgcgAGGCc-- -3'
miRNA:   3'- -GGcuuGGUCGGGGCGU-CCG---UCCGcag -5'
31010 5' -61.6 NC_006560.1 + 32576 0.66 0.647024
Target:  5'- -gGGGCCAGagccCCCCGCAGGgacacgggGGGCGg- -3'
miRNA:   3'- ggCUUGGUC----GGGGCGUCCg-------UCCGCag -5'
31010 5' -61.6 NC_006560.1 + 2885 0.66 0.647024
Target:  5'- gCGAGCaggaaggagaGGCCgCCGCgcgcggcgguccAGGCGGGCGg- -3'
miRNA:   3'- gGCUUGg---------UCGG-GGCG------------UCCGUCCGCag -5'
31010 5' -61.6 NC_006560.1 + 50202 0.66 0.647024
Target:  5'- cCCGGAC--GCCCC-CGGGCGGcggcggcgcGCGUCc -3'
miRNA:   3'- -GGCUUGguCGGGGcGUCCGUC---------CGCAG- -5'
31010 5' -61.6 NC_006560.1 + 56895 0.66 0.647024
Target:  5'- gCCGGGCCcccCCUCGCGGaGCcGGCGg- -3'
miRNA:   3'- -GGCUUGGuc-GGGGCGUC-CGuCCGCag -5'
31010 5' -61.6 NC_006560.1 + 85236 0.66 0.647024
Target:  5'- uCCGugacGCCGGCgCCCGCGGcGCGgaagccGGCGc- -3'
miRNA:   3'- -GGCu---UGGUCG-GGGCGUC-CGU------CCGCag -5'
31010 5' -61.6 NC_006560.1 + 120532 0.66 0.647024
Target:  5'- gCCGAGaggauCCGGCCcgaauCCGCcGGguGGCGcCu -3'
miRNA:   3'- -GGCUU-----GGUCGG-----GGCGuCCguCCGCaG- -5'
31010 5' -61.6 NC_006560.1 + 129932 0.66 0.647024
Target:  5'- gCCGGAggcgcgcagcCCGGCCCCGaCcucguccucgAGGCGGcGCuGUCg -3'
miRNA:   3'- -GGCUU----------GGUCGGGGC-G----------UCCGUC-CG-CAG- -5'
31010 5' -61.6 NC_006560.1 + 41817 0.66 0.647024
Target:  5'- gCGAAguaCGGCagCCGCAGGCuguggccguGGGCGUa -3'
miRNA:   3'- gGCUUg--GUCGg-GGCGUCCG---------UCCGCAg -5'
31010 5' -61.6 NC_006560.1 + 65936 0.66 0.647024
Target:  5'- cCCGcagguCCGGCCgCCagcgguaCAGGCGGGCGg- -3'
miRNA:   3'- -GGCuu---GGUCGG-GGc------GUCCGUCCGCag -5'
31010 5' -61.6 NC_006560.1 + 90441 0.66 0.647024
Target:  5'- cCCGGGCaaGGCCCCcaaGGGgGGGCGg- -3'
miRNA:   3'- -GGCUUGg-UCGGGGcg-UCCgUCCGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.