miRNA display CGI


Results 21 - 40 of 301 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31010 5' -61.6 NC_006560.1 + 103351 0.66 0.676512
Target:  5'- aCGAGCUucacggAGUCCCGCAGcugacuCAGGCccGUCg -3'
miRNA:   3'- gGCUUGG------UCGGGGCGUCc-----GUCCG--CAG- -5'
31010 5' -61.6 NC_006560.1 + 77206 0.66 0.676512
Target:  5'- gCCGGACCugcggaugguGCgCUGCcgGGGCgAGGCGUa -3'
miRNA:   3'- -GGCUUGGu---------CGgGGCG--UCCG-UCCGCAg -5'
31010 5' -61.6 NC_006560.1 + 54845 0.66 0.676512
Target:  5'- gCGAgcaGCCAcGCCgCCGCcGGgAGGCGcCc -3'
miRNA:   3'- gGCU---UGGU-CGG-GGCGuCCgUCCGCaG- -5'
31010 5' -61.6 NC_006560.1 + 142750 0.66 0.676512
Target:  5'- cCCGGcGCCcgGGCCCCGgGGGCgcgGGaGCGg- -3'
miRNA:   3'- -GGCU-UGG--UCGGGGCgUCCG---UC-CGCag -5'
31010 5' -61.6 NC_006560.1 + 119524 0.66 0.676512
Target:  5'- gCgGGGCCGcgcgcuaagcgcGCCCCGCGGGacccccauggcCGGGCG-Cg -3'
miRNA:   3'- -GgCUUGGU------------CGGGGCGUCC-----------GUCCGCaG- -5'
31010 5' -61.6 NC_006560.1 + 112262 0.66 0.676512
Target:  5'- gCCGGcucgcccacgGCC-GCCuCCGCuGGguGGCGg- -3'
miRNA:   3'- -GGCU----------UGGuCGG-GGCGuCCguCCGCag -5'
31010 5' -61.6 NC_006560.1 + 132919 0.66 0.673574
Target:  5'- gCCGAcggcgGCCAGCCaCGCcgagaucuucacgaAGGCcgAGGCGgUCg -3'
miRNA:   3'- -GGCU-----UGGUCGGgGCG--------------UCCG--UCCGC-AG- -5'
31010 5' -61.6 NC_006560.1 + 63240 0.66 0.666706
Target:  5'- gCGAGguCgAGCCCCaGCuugAGGCAGGCcGUg -3'
miRNA:   3'- gGCUU--GgUCGGGG-CG---UCCGUCCG-CAg -5'
31010 5' -61.6 NC_006560.1 + 17717 0.66 0.666706
Target:  5'- gCCGGaaaACCGacGCCCCG-GGGCGGGUuauaaaagGUCu -3'
miRNA:   3'- -GGCU---UGGU--CGGGGCgUCCGUCCG--------CAG- -5'
31010 5' -61.6 NC_006560.1 + 75508 0.66 0.666706
Target:  5'- gUCGAGCU-GCgCCGCcuGCAGGCGc- -3'
miRNA:   3'- -GGCUUGGuCGgGGCGucCGUCCGCag -5'
31010 5' -61.6 NC_006560.1 + 105288 0.66 0.666706
Target:  5'- gCGAccACCGcGCCCCuGCuccGGUGGGCGg- -3'
miRNA:   3'- gGCU--UGGU-CGGGG-CGu--CCGUCCGCag -5'
31010 5' -61.6 NC_006560.1 + 27158 0.66 0.666706
Target:  5'- gCGGGCCGGgcccUCCCGC-GGCGGcGCG-Cg -3'
miRNA:   3'- gGCUUGGUC----GGGGCGuCCGUC-CGCaG- -5'
31010 5' -61.6 NC_006560.1 + 39397 0.66 0.666706
Target:  5'- gCCGAACuCGGgCUCGgGGGCGccgcGGCGcCg -3'
miRNA:   3'- -GGCUUG-GUCgGGGCgUCCGU----CCGCaG- -5'
31010 5' -61.6 NC_006560.1 + 53834 0.66 0.666706
Target:  5'- gCGGGCCGGCCCgGgCcGGCcGGCa-- -3'
miRNA:   3'- gGCUUGGUCGGGgC-GuCCGuCCGcag -5'
31010 5' -61.6 NC_006560.1 + 54110 0.66 0.666706
Target:  5'- cCCGAaccuACCGGCgCaCCGCcccAGaGCGGGCGcCc -3'
miRNA:   3'- -GGCU----UGGUCG-G-GGCG---UC-CGUCCGCaG- -5'
31010 5' -61.6 NC_006560.1 + 434 0.66 0.666706
Target:  5'- cCCGGccuCCgcGGCCuCCGCGgccuccccGGCGGGCGg- -3'
miRNA:   3'- -GGCUu--GG--UCGG-GGCGU--------CCGUCCGCag -5'
31010 5' -61.6 NC_006560.1 + 106172 0.66 0.663759
Target:  5'- aCCGAGcCCGGcCCCCGCcccccgcucuucugGcGGCuGGCGg- -3'
miRNA:   3'- -GGCUU-GGUC-GGGGCG--------------U-CCGuCCGCag -5'
31010 5' -61.6 NC_006560.1 + 21728 0.66 0.66081
Target:  5'- gCgGAGCCGGCCgggcgccgcccgUCGCcggccgggguauaugAGGCGGGCGg- -3'
miRNA:   3'- -GgCUUGGUCGG------------GGCG---------------UCCGUCCGCag -5'
31010 5' -61.6 NC_006560.1 + 119110 0.66 0.656874
Target:  5'- gCGAGCgGGCCuuCCGCGGGCGccGGU-UCg -3'
miRNA:   3'- gGCUUGgUCGG--GGCGUCCGU--CCGcAG- -5'
31010 5' -61.6 NC_006560.1 + 117753 0.66 0.656874
Target:  5'- gCGAGcCCAGCCCgGgGGGCuguuCGUCu -3'
miRNA:   3'- gGCUU-GGUCGGGgCgUCCGucc-GCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.