miRNA display CGI


Results 21 - 40 of 301 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31010 5' -61.6 NC_006560.1 + 4983 0.7 0.43857
Target:  5'- uCCGAGCCGGgUCCGagccggGGGCGGGgugccCGUCg -3'
miRNA:   3'- -GGCUUGGUCgGGGCg-----UCCGUCC-----GCAG- -5'
31010 5' -61.6 NC_006560.1 + 5157 0.72 0.327382
Target:  5'- cCCGGGCCggGGCCgCGgGGGCGGGCc-- -3'
miRNA:   3'- -GGCUUGG--UCGGgGCgUCCGUCCGcag -5'
31010 5' -61.6 NC_006560.1 + 5249 0.66 0.633216
Target:  5'- -aGGGCCAGCUgCCGCGaggacgcGGCGgcggcggcgaggucGGCGUCg -3'
miRNA:   3'- ggCUUGGUCGG-GGCGU-------CCGU--------------CCGCAG- -5'
31010 5' -61.6 NC_006560.1 + 5655 0.7 0.404618
Target:  5'- cCCG-GCCGGCUCCGCcccgGGGCgcggGGGCGg- -3'
miRNA:   3'- -GGCuUGGUCGGGGCG----UCCG----UCCGCag -5'
31010 5' -61.6 NC_006560.1 + 7401 0.67 0.6066
Target:  5'- cUCGAgagccccGCCGGCCCCGggacccCAGGCAGccccGCGg- -3'
miRNA:   3'- -GGCU-------UGGUCGGGGC------GUCCGUC----CGCag -5'
31010 5' -61.6 NC_006560.1 + 9204 0.68 0.549053
Target:  5'- gCCGGugCGGUggaUCgGgGGGCgAGGCGUCg -3'
miRNA:   3'- -GGCUugGUCG---GGgCgUCCG-UCCGCAG- -5'
31010 5' -61.6 NC_006560.1 + 9357 0.76 0.19267
Target:  5'- gCCGGuCCGuGCCCgGCAGGCGGuCGUCg -3'
miRNA:   3'- -GGCUuGGU-CGGGgCGUCCGUCcGCAG- -5'
31010 5' -61.6 NC_006560.1 + 9497 0.67 0.607584
Target:  5'- aCGGcucGCCAcGCCCgCGCGcgccGGCAGGUGa- -3'
miRNA:   3'- gGCU---UGGU-CGGG-GCGU----CCGUCCGCag -5'
31010 5' -61.6 NC_006560.1 + 9844 0.7 0.429928
Target:  5'- gCCGGGCCuGGCCUC-CAuGGC-GGCGUCc -3'
miRNA:   3'- -GGCUUGG-UCGGGGcGU-CCGuCCGCAG- -5'
31010 5' -61.6 NC_006560.1 + 10675 0.67 0.6066
Target:  5'- cCCGGGC--GCCCCGCGGGaAGGUcgaagaacaccacGUCg -3'
miRNA:   3'- -GGCUUGguCGGGGCGUCCgUCCG-------------CAG- -5'
31010 5' -61.6 NC_006560.1 + 10771 0.66 0.637162
Target:  5'- gCGAgaauccacgccGCCAGgagcCCCCGCGGGgccCGGGCGa- -3'
miRNA:   3'- gGCU-----------UGGUC----GGGGCGUCC---GUCCGCag -5'
31010 5' -61.6 NC_006560.1 + 10908 0.69 0.4832
Target:  5'- gCGAagacGCCGGCCgCCGCcGGC-GGCGcCu -3'
miRNA:   3'- gGCU----UGGUCGG-GGCGuCCGuCCGCaG- -5'
31010 5' -61.6 NC_006560.1 + 11723 0.66 0.685309
Target:  5'- aCGucGGCCGGCCCCaggcgcggggcccGCA-GCGGcGCGUCc -3'
miRNA:   3'- gGC--UUGGUCGGGG-------------CGUcCGUC-CGCAG- -5'
31010 5' -61.6 NC_006560.1 + 12207 0.71 0.388275
Target:  5'- cCCG-ACgGGCCCCGCGGcCAGGagggaGUCc -3'
miRNA:   3'- -GGCuUGgUCGGGGCGUCcGUCCg----CAG- -5'
31010 5' -61.6 NC_006560.1 + 12335 0.67 0.607584
Target:  5'- aCCGGaggcACCucgGGgCUgGCgGGGCGGGCGUCu -3'
miRNA:   3'- -GGCU----UGG---UCgGGgCG-UCCGUCCGCAG- -5'
31010 5' -61.6 NC_006560.1 + 12655 0.7 0.421388
Target:  5'- cCCGGccACCAGCCCCGCGccGGcCAGccccGCGcCg -3'
miRNA:   3'- -GGCU--UGGUCGGGGCGU--CC-GUC----CGCaG- -5'
31010 5' -61.6 NC_006560.1 + 13149 0.68 0.52042
Target:  5'- gCGGACguaGGuCCCCGCggucucgaAGGCGGGCG-Cg -3'
miRNA:   3'- gGCUUGg--UC-GGGGCG--------UCCGUCCGCaG- -5'
31010 5' -61.6 NC_006560.1 + 15288 0.66 0.686285
Target:  5'- -gGAGCCGGCgCgGCGGcGguGGCcUCg -3'
miRNA:   3'- ggCUUGGUCGgGgCGUC-CguCCGcAG- -5'
31010 5' -61.6 NC_006560.1 + 15324 0.7 0.429928
Target:  5'- uCCGcGCCGGUCCCGUucgcGGCcGGCG-Cg -3'
miRNA:   3'- -GGCuUGGUCGGGGCGu---CCGuCCGCaG- -5'
31010 5' -61.6 NC_006560.1 + 15693 0.67 0.627297
Target:  5'- aCCGAgcGCCacaggGGCgCCGCAGGgGcGGCGg- -3'
miRNA:   3'- -GGCU--UGG-----UCGgGGCGUCCgU-CCGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.