miRNA display CGI


Results 21 - 40 of 301 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31010 5' -61.6 NC_006560.1 + 35176 0.74 0.255079
Target:  5'- gCCGGGCCcggGGCCCCGCcccgggggcgccgGGGCccGGGCGcCg -3'
miRNA:   3'- -GGCUUGG---UCGGGGCG-------------UCCG--UCCGCaG- -5'
31010 5' -61.6 NC_006560.1 + 52259 0.74 0.261618
Target:  5'- gCGcACC-GCCCCgauGCGGGCGcGGCGUCg -3'
miRNA:   3'- gGCuUGGuCGGGG---CGUCCGU-CCGCAG- -5'
31010 5' -61.6 NC_006560.1 + 40284 0.74 0.26768
Target:  5'- aCCGGccgcagacccccGCCAGCCCCccGCgcuuGGGCGGGCG-Cg -3'
miRNA:   3'- -GGCU------------UGGUCGGGG--CG----UCCGUCCGCaG- -5'
31010 5' -61.6 NC_006560.1 + 50081 0.73 0.273854
Target:  5'- aCGAcgccGCCGGCCCCGCcGGCggcacGGGCaucGUCg -3'
miRNA:   3'- gGCU----UGGUCGGGGCGuCCG-----UCCG---CAG- -5'
31010 5' -61.6 NC_006560.1 + 23366 0.73 0.280143
Target:  5'- gCCGcccCCGGCCUCGCcGGCuacggcgccgcGGGCGUCg -3'
miRNA:   3'- -GGCuu-GGUCGGGGCGuCCG-----------UCCGCAG- -5'
31010 5' -61.6 NC_006560.1 + 78249 0.73 0.280143
Target:  5'- gUCGGGCCGGgcccccgaCCCGCAgGGCGGGCG-Cg -3'
miRNA:   3'- -GGCUUGGUCg-------GGGCGU-CCGUCCGCaG- -5'
31010 5' -61.6 NC_006560.1 + 137098 0.73 0.286545
Target:  5'- gCUGGACgCGGCCaaGCGGGCccGGGCGUa -3'
miRNA:   3'- -GGCUUG-GUCGGggCGUCCG--UCCGCAg -5'
31010 5' -61.6 NC_006560.1 + 3465 0.73 0.286545
Target:  5'- gCGcuuGCgGGCCgCGCGGGC-GGCGUCg -3'
miRNA:   3'- gGCu--UGgUCGGgGCGUCCGuCCGCAG- -5'
31010 5' -61.6 NC_006560.1 + 59462 0.73 0.286545
Target:  5'- gCGGgcgGCCGGCCgaaCGCGGGCGGGagGUCg -3'
miRNA:   3'- gGCU---UGGUCGGg--GCGUCCGUCCg-CAG- -5'
31010 5' -61.6 NC_006560.1 + 3288 0.73 0.286545
Target:  5'- gUCGGGCCcGCCggGCGGGCGGGCGg- -3'
miRNA:   3'- -GGCUUGGuCGGggCGUCCGUCCGCag -5'
31010 5' -61.6 NC_006560.1 + 118375 0.73 0.286545
Target:  5'- gCGGGCCuggAGCCCCcgGgGGGCGGGCGg- -3'
miRNA:   3'- gGCUUGG---UCGGGG--CgUCCGUCCGCag -5'
31010 5' -61.6 NC_006560.1 + 142452 0.73 0.286545
Target:  5'- gCCGcg-CGGCCCCGCAGGUGcGGCGg- -3'
miRNA:   3'- -GGCuugGUCGGGGCGUCCGU-CCGCag -5'
31010 5' -61.6 NC_006560.1 + 65349 0.73 0.293063
Target:  5'- gCCGGccCCAGCCCCGUcGGC-GGCGg- -3'
miRNA:   3'- -GGCUu-GGUCGGGGCGuCCGuCCGCag -5'
31010 5' -61.6 NC_006560.1 + 140258 0.73 0.299695
Target:  5'- cUCGGGCCAGUCCaacgaGGGCGGGCGg- -3'
miRNA:   3'- -GGCUUGGUCGGGgcg--UCCGUCCGCag -5'
31010 5' -61.6 NC_006560.1 + 133445 0.73 0.299695
Target:  5'- gCCGAcCCAcGCguccucgggCCCGCGGGCuccgGGGCGUCc -3'
miRNA:   3'- -GGCUuGGU-CG---------GGGCGUCCG----UCCGCAG- -5'
31010 5' -61.6 NC_006560.1 + 85861 0.73 0.299695
Target:  5'- cCCGAAggcguCgAGCCCCGCcGGCAGGgGg- -3'
miRNA:   3'- -GGCUU-----GgUCGGGGCGuCCGUCCgCag -5'
31010 5' -61.6 NC_006560.1 + 19902 0.73 0.306443
Target:  5'- gCGGACCAGaCgCCGCAGGCGGucagccgcgccGCGUg -3'
miRNA:   3'- gGCUUGGUC-GgGGCGUCCGUC-----------CGCAg -5'
31010 5' -61.6 NC_006560.1 + 48005 0.72 0.313307
Target:  5'- cCCGcccGCCGGCCCC-CGGGCAuGGaGUCg -3'
miRNA:   3'- -GGCu--UGGUCGGGGcGUCCGU-CCgCAG- -5'
31010 5' -61.6 NC_006560.1 + 137193 0.72 0.320286
Target:  5'- -aGGGCgCGGCCCCGCcggcggccggGGaGCGGGCGUUc -3'
miRNA:   3'- ggCUUG-GUCGGGGCG----------UC-CGUCCGCAG- -5'
31010 5' -61.6 NC_006560.1 + 145275 0.72 0.320286
Target:  5'- cCCGGccccCCGGCCCCcUGGGCGGGCcUCg -3'
miRNA:   3'- -GGCUu---GGUCGGGGcGUCCGUCCGcAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.