miRNA display CGI


Results 1 - 20 of 301 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31010 5' -61.6 NC_006560.1 + 120905 1.11 0.00067
Target:  5'- gCCGAACCAGCCCCGCAGGCAGGCGUCg -3'
miRNA:   3'- -GGCUUGGUCGGGGCGUCCGUCCGCAG- -5'
31010 5' -61.6 NC_006560.1 + 147547 0.81 0.084545
Target:  5'- aCGGGCUGGCCCaUGCGGGCGGGCGg- -3'
miRNA:   3'- gGCUUGGUCGGG-GCGUCCGUCCGCag -5'
31010 5' -61.6 NC_006560.1 + 125851 0.8 0.109082
Target:  5'- cCCGAGCCAgcccccgcGCCCCGCGGGCcccccgucuagGGGCGa- -3'
miRNA:   3'- -GGCUUGGU--------CGGGGCGUCCG-----------UCCGCag -5'
31010 5' -61.6 NC_006560.1 + 42946 0.77 0.154755
Target:  5'- gCCGGcuCCAGCCCCGCGGG--GGCGUa -3'
miRNA:   3'- -GGCUu-GGUCGGGGCGUCCguCCGCAg -5'
31010 5' -61.6 NC_006560.1 + 1992 0.77 0.162549
Target:  5'- gCCGGGCCAGCUCCa-GGGCGgcGGCGUCc -3'
miRNA:   3'- -GGCUUGGUCGGGGcgUCCGU--CCGCAG- -5'
31010 5' -61.6 NC_006560.1 + 140346 0.76 0.179203
Target:  5'- gCGGGaCAGCCCCGCGGGCGucGGCG-Cg -3'
miRNA:   3'- gGCUUgGUCGGGGCGUCCGU--CCGCaG- -5'
31010 5' -61.6 NC_006560.1 + 39602 0.76 0.179203
Target:  5'- gCGcGCCGGCCCgcggagcgcCGC-GGCGGGCGUCg -3'
miRNA:   3'- gGCuUGGUCGGG---------GCGuCCGUCCGCAG- -5'
31010 5' -61.6 NC_006560.1 + 45170 0.76 0.179203
Target:  5'- cCCGAACCcccccguGCCCCGUucgcugggcgGGGCuucGGCGUCg -3'
miRNA:   3'- -GGCUUGGu------CGGGGCG----------UCCGu--CCGCAG- -5'
31010 5' -61.6 NC_006560.1 + 3394 0.76 0.183596
Target:  5'- gCGGGCCGGCUCUucuugcgcgccgGCGGGCGGGCGg- -3'
miRNA:   3'- gGCUUGGUCGGGG------------CGUCCGUCCGCag -5'
31010 5' -61.6 NC_006560.1 + 148897 0.76 0.183596
Target:  5'- uCCGGGCUcuCCCCGCuGGGCGGGCG-Ca -3'
miRNA:   3'- -GGCUUGGucGGGGCG-UCCGUCCGCaG- -5'
31010 5' -61.6 NC_006560.1 + 22617 0.76 0.183596
Target:  5'- cCCGcGCCGccGCCgCCGCGGGCcgccgccgagacGGGCGUCg -3'
miRNA:   3'- -GGCuUGGU--CGG-GGCGUCCG------------UCCGCAG- -5'
31010 5' -61.6 NC_006560.1 + 9357 0.76 0.19267
Target:  5'- gCCGGuCCGuGCCCgGCAGGCGGuCGUCg -3'
miRNA:   3'- -GGCUuGGU-CGGGgCGUCCGUCcGCAG- -5'
31010 5' -61.6 NC_006560.1 + 64981 0.76 0.197353
Target:  5'- gCgGGGCCGGCCgCCGCGGGgGGGCuuguGUCc -3'
miRNA:   3'- -GgCUUGGUCGG-GGCGUCCgUCCG----CAG- -5'
31010 5' -61.6 NC_006560.1 + 64159 0.75 0.217086
Target:  5'- gCGGGuccCCAGgCCCaGCAuGGCGGGCGUCg -3'
miRNA:   3'- gGCUU---GGUCgGGG-CGU-CCGUCCGCAG- -5'
31010 5' -61.6 NC_006560.1 + 142419 0.75 0.222277
Target:  5'- cCCGGACCccgGGCCCCGCcgcccGGCGcGGCGg- -3'
miRNA:   3'- -GGCUUGG---UCGGGGCGu----CCGU-CCGCag -5'
31010 5' -61.6 NC_006560.1 + 16212 0.75 0.222277
Target:  5'- gCgGAGCCGGgCCCGCGGGCccggcaucgucgAGGCGg- -3'
miRNA:   3'- -GgCUUGGUCgGGGCGUCCG------------UCCGCag -5'
31010 5' -61.6 NC_006560.1 + 42059 0.75 0.227572
Target:  5'- gCgGAGgCGGCCuCCGCGGGCGGGgGcUCg -3'
miRNA:   3'- -GgCUUgGUCGG-GGCGUCCGUCCgC-AG- -5'
31010 5' -61.6 NC_006560.1 + 18943 0.75 0.232975
Target:  5'- gCCGcGCgGgGCCCgGCGGGCgccGGGCGUCg -3'
miRNA:   3'- -GGCuUGgU-CGGGgCGUCCG---UCCGCAG- -5'
31010 5' -61.6 NC_006560.1 + 76050 0.74 0.240718
Target:  5'- gCCGAcCCGGCCgCCGC-GGCGgaacugguucgcaccGGCGUCg -3'
miRNA:   3'- -GGCUuGGUCGG-GGCGuCCGU---------------CCGCAG- -5'
31010 5' -61.6 NC_006560.1 + 53038 0.74 0.243536
Target:  5'- aCGGGCUccaugcagugcauGGCCCUGCGGGCGGcCGUCu -3'
miRNA:   3'- gGCUUGG-------------UCGGGGCGUCCGUCcGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.