miRNA display CGI


Results 1 - 20 of 301 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31010 5' -61.6 NC_006560.1 + 162 0.68 0.511003
Target:  5'- cCCGGcCCcGCCCCGCGGucccggccccGCcGGCGUUu -3'
miRNA:   3'- -GGCUuGGuCGGGGCGUC----------CGuCCGCAG- -5'
31010 5' -61.6 NC_006560.1 + 434 0.66 0.666706
Target:  5'- cCCGGccuCCgcGGCCuCCGCGgccuccccGGCGGGCGg- -3'
miRNA:   3'- -GGCUu--GG--UCGG-GGCGU--------CCGUCCGCag -5'
31010 5' -61.6 NC_006560.1 + 523 0.67 0.59775
Target:  5'- gCCGGggggcggcgGCCGGCCgCGCcccGGGUccccGGCGUCc -3'
miRNA:   3'- -GGCU---------UGGUCGGgGCG---UCCGu---CCGCAG- -5'
31010 5' -61.6 NC_006560.1 + 662 0.66 0.656874
Target:  5'- uUCGcaccCCGGCgcgCCCGCGGcGCGGGCucGUCg -3'
miRNA:   3'- -GGCuu--GGUCG---GGGCGUC-CGUCCG--CAG- -5'
31010 5' -61.6 NC_006560.1 + 1201 0.66 0.686285
Target:  5'- uCCGGACCccaGGCucCCCGgGGGCGGGg--- -3'
miRNA:   3'- -GGCUUGG---UCG--GGGCgUCCGUCCgcag -5'
31010 5' -61.6 NC_006560.1 + 1867 0.69 0.456146
Target:  5'- gCGGGCgGGggUCGCGGGCGGGgGUCg -3'
miRNA:   3'- gGCUUGgUCggGGCGUCCGUCCgCAG- -5'
31010 5' -61.6 NC_006560.1 + 1992 0.77 0.162549
Target:  5'- gCCGGGCCAGCUCCa-GGGCGgcGGCGUCc -3'
miRNA:   3'- -GGCUUGGUCGGGGcgUCCGU--CCGCAG- -5'
31010 5' -61.6 NC_006560.1 + 2231 0.67 0.631243
Target:  5'- aCGGGCCgcagcggcgcacccaGGCCCCaGCGcGcGCAGGCG-Cg -3'
miRNA:   3'- gGCUUGG---------------UCGGGG-CGU-C-CGUCCGCaG- -5'
31010 5' -61.6 NC_006560.1 + 2311 0.67 0.578158
Target:  5'- gCCGGcggcgGCC-GCCUCGCGcGCGGGCGa- -3'
miRNA:   3'- -GGCU-----UGGuCGGGGCGUcCGUCCGCag -5'
31010 5' -61.6 NC_006560.1 + 2666 0.67 0.627297
Target:  5'- gCGGGCCAcuCCUCGgGcGGCAcGGCGUCc -3'
miRNA:   3'- gGCUUGGUc-GGGGCgU-CCGU-CCGCAG- -5'
31010 5' -61.6 NC_006560.1 + 2885 0.66 0.647024
Target:  5'- gCGAGCaggaaggagaGGCCgCCGCgcgcggcgguccAGGCGGGCGg- -3'
miRNA:   3'- gGCUUGg---------UCGG-GGCG------------UCCGUCCGCag -5'
31010 5' -61.6 NC_006560.1 + 3063 0.67 0.626311
Target:  5'- cCCGAgggcgcgGCCggAGCCCgGCucGGGCGGGCc-- -3'
miRNA:   3'- -GGCU-------UGG--UCGGGgCG--UCCGUCCGcag -5'
31010 5' -61.6 NC_006560.1 + 3288 0.73 0.286545
Target:  5'- gUCGGGCCcGCCggGCGGGCGGGCGg- -3'
miRNA:   3'- -GGCUUGGuCGGggCGUCCGUCCGCag -5'
31010 5' -61.6 NC_006560.1 + 3322 0.7 0.41295
Target:  5'- gCGGGCCGGgggCGCGGGCGGGCGg- -3'
miRNA:   3'- gGCUUGGUCgggGCGUCCGUCCGCag -5'
31010 5' -61.6 NC_006560.1 + 3394 0.76 0.183596
Target:  5'- gCGGGCCGGCUCUucuugcgcgccgGCGGGCGGGCGg- -3'
miRNA:   3'- gGCUUGGUCGGGG------------CGUCCGUCCGCag -5'
31010 5' -61.6 NC_006560.1 + 3465 0.73 0.286545
Target:  5'- gCGcuuGCgGGCCgCGCGGGC-GGCGUCg -3'
miRNA:   3'- gGCu--UGgUCGGgGCGUCCGuCCGCAG- -5'
31010 5' -61.6 NC_006560.1 + 3732 0.68 0.529903
Target:  5'- gCGcAGCCAGgCgCGCGGGCGcGGCG-Cg -3'
miRNA:   3'- gGC-UUGGUCgGgGCGUCCGU-CCGCaG- -5'
31010 5' -61.6 NC_006560.1 + 4004 0.68 0.511003
Target:  5'- gCCGuAGCCGGCgaggCCGgGGGCGgcggcGGCGUCc -3'
miRNA:   3'- -GGC-UUGGUCGg---GGCgUCCGU-----CCGCAG- -5'
31010 5' -61.6 NC_006560.1 + 4534 0.7 0.421388
Target:  5'- -aGAGCaCGcGCCCCGgGGGCGGGgGcUCg -3'
miRNA:   3'- ggCUUG-GU-CGGGGCgUCCGUCCgC-AG- -5'
31010 5' -61.6 NC_006560.1 + 4647 0.67 0.578158
Target:  5'- aCGGGCCgcGGCCgCGCGgccgugaagcGGCccguGGCGUCg -3'
miRNA:   3'- gGCUUGG--UCGGgGCGU----------CCGu---CCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.