miRNA display CGI


Results 1 - 20 of 301 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31010 5' -61.6 NC_006560.1 + 150491 0.68 0.511003
Target:  5'- cCCGGcCCcGCCCCGCGGucccggccccGCcGGCGUUu -3'
miRNA:   3'- -GGCUuGGuCGGGGCGUC----------CGuCCGCAG- -5'
31010 5' -61.6 NC_006560.1 + 149891 0.68 0.549053
Target:  5'- gCGGAagGGCCCCGCGcgccgaaggaacGGCGgccgggcgcGGCGUCg -3'
miRNA:   3'- gGCUUggUCGGGGCGU------------CCGU---------CCGCAG- -5'
31010 5' -61.6 NC_006560.1 + 149825 0.68 0.55871
Target:  5'- gCgGAGgCGGCCUCGCGGcccccggccGCGGGCGg- -3'
miRNA:   3'- -GgCUUgGUCGGGGCGUC---------CGUCCGCag -5'
31010 5' -61.6 NC_006560.1 + 149750 0.66 0.686285
Target:  5'- aCGAccACCGacCCCCGgGGcGCggGGGCGUCg -3'
miRNA:   3'- gGCU--UGGUc-GGGGCgUC-CG--UCCGCAG- -5'
31010 5' -61.6 NC_006560.1 + 149672 0.68 0.549053
Target:  5'- aCCGAcucaccCCAGgaCCGCAGGCGGGaCGa- -3'
miRNA:   3'- -GGCUu-----GGUCggGGCGUCCGUCC-GCag -5'
31010 5' -61.6 NC_006560.1 + 148897 0.76 0.183596
Target:  5'- uCCGGGCUcuCCCCGCuGGGCGGGCG-Ca -3'
miRNA:   3'- -GGCUUGGucGGGGCG-UCCGUCCGCaG- -5'
31010 5' -61.6 NC_006560.1 + 148754 0.68 0.538492
Target:  5'- uUGGGgCGGCCCCGaCGGGCgccauguuggaggGGGCGg- -3'
miRNA:   3'- gGCUUgGUCGGGGC-GUCCG-------------UCCGCag -5'
31010 5' -61.6 NC_006560.1 + 148624 0.66 0.637162
Target:  5'- -gGGGgCGGuCCCCGaCGGGCGGGCc-- -3'
miRNA:   3'- ggCUUgGUC-GGGGC-GUCCGUCCGcag -5'
31010 5' -61.6 NC_006560.1 + 147954 0.69 0.501659
Target:  5'- gCGGGcCCGGgCUCGCAGaGCucGGCGUCc -3'
miRNA:   3'- gGCUU-GGUCgGGGCGUC-CGu-CCGCAG- -5'
31010 5' -61.6 NC_006560.1 + 147547 0.81 0.084545
Target:  5'- aCGGGCUGGCCCaUGCGGGCGGGCGg- -3'
miRNA:   3'- gGCUUGGUCGGG-GCGUCCGUCCGCag -5'
31010 5' -61.6 NC_006560.1 + 146963 0.7 0.41295
Target:  5'- gCCGGggGCCGGgCCUggGCGGGUGGGCGg- -3'
miRNA:   3'- -GGCU--UGGUCgGGG--CGUCCGUCCGCag -5'
31010 5' -61.6 NC_006560.1 + 146282 0.66 0.656874
Target:  5'- -gGGGCCGGaCgCCGCggGGGCGcggucGGCGUCc -3'
miRNA:   3'- ggCUUGGUC-GgGGCG--UCCGU-----CCGCAG- -5'
31010 5' -61.6 NC_006560.1 + 146090 0.67 0.626311
Target:  5'- gCGGGCCcacugcGGCUCCGCgucggccAGGCAGcGCGcCa -3'
miRNA:   3'- gGCUUGG------UCGGGGCG-------UCCGUC-CGCaG- -5'
31010 5' -61.6 NC_006560.1 + 145803 0.69 0.459707
Target:  5'- uCCGGGgcggcgggcacacgcCCGGCCUCGCGcGGCGGGCc-- -3'
miRNA:   3'- -GGCUU---------------GGUCGGGGCGU-CCGUCCGcag -5'
31010 5' -61.6 NC_006560.1 + 145275 0.72 0.320286
Target:  5'- cCCGGccccCCGGCCCCcUGGGCGGGCcUCg -3'
miRNA:   3'- -GGCUu---GGUCGGGGcGUCCGUCCGcAG- -5'
31010 5' -61.6 NC_006560.1 + 144381 0.67 0.627297
Target:  5'- -aGGGgCGGCgUCCGCGGGCcGGCGg- -3'
miRNA:   3'- ggCUUgGUCG-GGGCGUCCGuCCGCag -5'
31010 5' -61.6 NC_006560.1 + 144202 0.69 0.474094
Target:  5'- cCCGGGCCGGCgCCCGCcucccuGCcGGCGg- -3'
miRNA:   3'- -GGCUUGGUCG-GGGCGuc----CGuCCGCag -5'
31010 5' -61.6 NC_006560.1 + 143005 0.66 0.685309
Target:  5'- -aGAGCCAccgagacGCCCgGCGGGaCAGGUa-- -3'
miRNA:   3'- ggCUUGGU-------CGGGgCGUCC-GUCCGcag -5'
31010 5' -61.6 NC_006560.1 + 142750 0.66 0.676512
Target:  5'- cCCGGcGCCcgGGCCCCGgGGGCgcgGGaGCGg- -3'
miRNA:   3'- -GGCU-UGG--UCGGGGCgUCCG---UC-CGCag -5'
31010 5' -61.6 NC_006560.1 + 142452 0.73 0.286545
Target:  5'- gCCGcg-CGGCCCCGCAGGUGcGGCGg- -3'
miRNA:   3'- -GGCuugGUCGGGGCGUCCGU-CCGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.