miRNA display CGI


Results 1 - 20 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31011 3' -63.9 NC_006560.1 + 120322 1.09 0.000722
Target:  5'- uGGGACUCGGCCGCCGUCGCCGAGGCGu -3'
miRNA:   3'- -CCCUGAGCCGGCGGCAGCGGCUCCGC- -5'
31011 3' -63.9 NC_006560.1 + 35260 0.84 0.041985
Target:  5'- cGGGGCcgcgCGGCCGCCG-CGCCG-GGCGg -3'
miRNA:   3'- -CCCUGa---GCCGGCGGCaGCGGCuCCGC- -5'
31011 3' -63.9 NC_006560.1 + 26272 0.79 0.096261
Target:  5'- cGGGGCUCGcGCCGCCGgggaGCCuggcGGGCGg -3'
miRNA:   3'- -CCCUGAGC-CGGCGGCag--CGGc---UCCGC- -5'
31011 3' -63.9 NC_006560.1 + 36952 0.79 0.096261
Target:  5'- cGGGACUcCGGUCGUCG-CGCCGAGGa- -3'
miRNA:   3'- -CCCUGA-GCCGGCGGCaGCGGCUCCgc -5'
31011 3' -63.9 NC_006560.1 + 133388 0.78 0.10808
Target:  5'- aGGGCggCGGCCGCCGUCuccuccucgccggaGCuCGGGGCGg -3'
miRNA:   3'- cCCUGa-GCCGGCGGCAG--------------CG-GCUCCGC- -5'
31011 3' -63.9 NC_006560.1 + 4554 0.77 0.126066
Target:  5'- gGGGGCUCGGCC-CCGggccagggcUCGCCGcuGGCGu -3'
miRNA:   3'- -CCCUGAGCCGGcGGC---------AGCGGCu-CCGC- -5'
31011 3' -63.9 NC_006560.1 + 33835 0.77 0.129165
Target:  5'- cGGGGgUCGGCCGCgGgCGUgGGGGCGc -3'
miRNA:   3'- -CCCUgAGCCGGCGgCaGCGgCUCCGC- -5'
31011 3' -63.9 NC_006560.1 + 39405 0.77 0.135574
Target:  5'- cGGGCUCGGgggCGCCGcggCGCCGGGGCc -3'
miRNA:   3'- cCCUGAGCCg--GCGGCa--GCGGCUCCGc -5'
31011 3' -63.9 NC_006560.1 + 22060 0.77 0.138887
Target:  5'- aGGGGC-C-GCCGCCGUCGCaCGcGGCGg -3'
miRNA:   3'- -CCCUGaGcCGGCGGCAGCG-GCuCCGC- -5'
31011 3' -63.9 NC_006560.1 + 130226 0.77 0.138887
Target:  5'- gGGGACgCGGUgGCgCGcuUCGCCGAGGUGg -3'
miRNA:   3'- -CCCUGaGCCGgCG-GC--AGCGGCUCCGC- -5'
31011 3' -63.9 NC_006560.1 + 50242 0.76 0.149277
Target:  5'- cGGGAacgUGGCCGCCG-CGCCuccGGGCGg -3'
miRNA:   3'- -CCCUga-GCCGGCGGCaGCGGc--UCCGC- -5'
31011 3' -63.9 NC_006560.1 + 36115 0.76 0.152894
Target:  5'- cGGGcACcggGGCCGCCGcCGCCGGGGuCGa -3'
miRNA:   3'- -CCC-UGag-CCGGCGGCaGCGGCUCC-GC- -5'
31011 3' -63.9 NC_006560.1 + 130294 0.76 0.156591
Target:  5'- cGGcGAgauCUCGGCCGCCGgCGCgGuGGCGg -3'
miRNA:   3'- -CC-CU---GAGCCGGCGGCaGCGgCuCCGC- -5'
31011 3' -63.9 NC_006560.1 + 101922 0.76 0.156591
Target:  5'- -uGGC-CGGCCGCCcucGUCGCCGAuGGCGc -3'
miRNA:   3'- ccCUGaGCCGGCGG---CAGCGGCU-CCGC- -5'
31011 3' -63.9 NC_006560.1 + 45784 0.76 0.156591
Target:  5'- cGGGCUCGGuCCGCCGggGCCuuuuggcccccGGGGCGg -3'
miRNA:   3'- cCCUGAGCC-GGCGGCagCGG-----------CUCCGC- -5'
31011 3' -63.9 NC_006560.1 + 75185 0.76 0.161902
Target:  5'- aGGGcgaccgcgccgcgcuGCUggaGGCCGCCGcgcgcgcggUCGCCGAGGCGc -3'
miRNA:   3'- -CCC---------------UGAg--CCGGCGGC---------AGCGGCUCCGC- -5'
31011 3' -63.9 NC_006560.1 + 23728 0.75 0.171792
Target:  5'- cGGcGGCgccgaGGCCGCCGUCGCCGccgugcgcgccguGGGCc -3'
miRNA:   3'- -CC-CUGag---CCGGCGGCAGCGGC-------------UCCGc -5'
31011 3' -63.9 NC_006560.1 + 108667 0.75 0.180512
Target:  5'- aGGACgucggugCGGCCcgccgccggGCCGUCGUCGAGGgGg -3'
miRNA:   3'- cCCUGa------GCCGG---------CGGCAGCGGCUCCgC- -5'
31011 3' -63.9 NC_006560.1 + 51481 0.75 0.180512
Target:  5'- cGGGCggCGGCC-CCGagGCCGAGGCc -3'
miRNA:   3'- cCCUGa-GCCGGcGGCagCGGCUCCGc -5'
31011 3' -63.9 NC_006560.1 + 35322 0.75 0.184801
Target:  5'- cGGGCUCGGCCcucccggagGCCGcCGCCcccggcccccGAGGCGc -3'
miRNA:   3'- cCCUGAGCCGG---------CGGCaGCGG----------CUCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.