miRNA display CGI


Results 1 - 20 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31011 3' -63.9 NC_006560.1 + 527 0.68 0.456305
Target:  5'- gGGGGCggCGGCCgGCCG-CGCCccGGGUc -3'
miRNA:   3'- -CCCUGa-GCCGG-CGGCaGCGGc-UCCGc -5'
31011 3' -63.9 NC_006560.1 + 1907 0.66 0.622179
Target:  5'- -cGGCUaccaguccucggCGGCCGCCGgcUCGCCGuccGGGUc -3'
miRNA:   3'- ccCUGA------------GCCGGCGGC--AGCGGC---UCCGc -5'
31011 3' -63.9 NC_006560.1 + 2304 0.7 0.359786
Target:  5'- cGGGCgcgccggcggCGGCCGCC-UCGCgCGcGGGCGa -3'
miRNA:   3'- cCCUGa---------GCCGGCGGcAGCG-GC-UCCGC- -5'
31011 3' -63.9 NC_006560.1 + 2936 0.68 0.482546
Target:  5'- gGGGAgaC-GCCGCCGagcuccUCGCCG-GGCa -3'
miRNA:   3'- -CCCUgaGcCGGCGGC------AGCGGCuCCGc -5'
31011 3' -63.9 NC_006560.1 + 3283 0.67 0.555709
Target:  5'- cGGGGgUCGGgcCCGCCGg-GCgGgcGGGCGg -3'
miRNA:   3'- -CCCUgAGCC--GGCGGCagCGgC--UCCGC- -5'
31011 3' -63.9 NC_006560.1 + 3329 0.67 0.546355
Target:  5'- gGGGGCgcgggCGGgCGgCGUCGgCGucGGCGu -3'
miRNA:   3'- -CCCUGa----GCCgGCgGCAGCgGCu-CCGC- -5'
31011 3' -63.9 NC_006560.1 + 3431 0.67 0.546355
Target:  5'- cGGGCgCGGgCGCC--CGCgGGGGCGa -3'
miRNA:   3'- cCCUGaGCCgGCGGcaGCGgCUCCGC- -5'
31011 3' -63.9 NC_006560.1 + 3653 0.68 0.464968
Target:  5'- cGGcCUCGgcGCCGCCGgggacgcggaggUCGCCGcgcAGGCGc -3'
miRNA:   3'- cCCuGAGC--CGGCGGC------------AGCGGC---UCCGC- -5'
31011 3' -63.9 NC_006560.1 + 3780 0.68 0.491454
Target:  5'- cGGGACcgcggcgcgcgCGGCCGCCa--GCCcGGGCa -3'
miRNA:   3'- -CCCUGa----------GCCGGCGGcagCGGcUCCGc -5'
31011 3' -63.9 NC_006560.1 + 3936 0.68 0.464968
Target:  5'- gGGGGCggcGCCGCgGUCGgCGgcgaGGGCGg -3'
miRNA:   3'- -CCCUGagcCGGCGgCAGCgGC----UCCGC- -5'
31011 3' -63.9 NC_006560.1 + 4022 0.73 0.254802
Target:  5'- gGGGGCggCGGCgG-CGUC-CCGGGGCGg -3'
miRNA:   3'- -CCCUGa-GCCGgCgGCAGcGGCUCCGC- -5'
31011 3' -63.9 NC_006560.1 + 4554 0.77 0.126066
Target:  5'- gGGGGCUCGGCC-CCGggccagggcUCGCCGcuGGCGu -3'
miRNA:   3'- -CCCUGAGCCGGcGGC---------AGCGGCu-CCGC- -5'
31011 3' -63.9 NC_006560.1 + 5152 0.66 0.584026
Target:  5'- cGGGGCcCgGGCCGggGcCGCgGGGGCGg -3'
miRNA:   3'- -CCCUGaG-CCGGCggCaGCGgCUCCGC- -5'
31011 3' -63.9 NC_006560.1 + 5305 0.67 0.546355
Target:  5'- ----gUCGGCCGCCG-CGUgCGAcGGCGg -3'
miRNA:   3'- cccugAGCCGGCGGCaGCG-GCU-CCGC- -5'
31011 3' -63.9 NC_006560.1 + 5338 0.68 0.482546
Target:  5'- cGGGuccggcgucCUCGGCgGgCCGUCGuCCGGguccGGCGa -3'
miRNA:   3'- -CCCu--------GAGCCGgC-GGCAGC-GGCU----CCGC- -5'
31011 3' -63.9 NC_006560.1 + 5680 0.67 0.509493
Target:  5'- gGGGGCggcCGGCggCGCCGccCGUCGAGGa- -3'
miRNA:   3'- -CCCUGa--GCCG--GCGGCa-GCGGCUCCgc -5'
31011 3' -63.9 NC_006560.1 + 6411 0.67 0.513135
Target:  5'- cGGcGGCgccgCGGCCggcccgccgcacaacGCCGUCGCCGccGCc -3'
miRNA:   3'- -CC-CUGa---GCCGG---------------CGGCAGCGGCucCGc -5'
31011 3' -63.9 NC_006560.1 + 7761 0.66 0.565109
Target:  5'- --cAC-CGGCCGCUGuuucgccucaUCGUCGAGGCu -3'
miRNA:   3'- cccUGaGCCGGCGGC----------AGCGGCUCCGc -5'
31011 3' -63.9 NC_006560.1 + 9612 0.72 0.278456
Target:  5'- cGGGGCgCGGCCccugggGCCG-CGCCGAaggGGUGg -3'
miRNA:   3'- -CCCUGaGCCGG------CGGCaGCGGCU---CCGC- -5'
31011 3' -63.9 NC_006560.1 + 10297 0.74 0.212461
Target:  5'- gGGGGCg-GGCCGCCGgggacCGCCGccGCGa -3'
miRNA:   3'- -CCCUGagCCGGCGGCa----GCGGCucCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.